Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq588 111 2e-19 seq2831 98.7 1e-15 seq987 84.2 3e-11 seq566 84.2 3e-11 >seq588 Length=1544836 Score = 111 bits (122), Expect = 2e-19 Identities = 109/138 (79%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 118739 CTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCC 118798 |||||||||| |||||||||| |||||| ||||||||||| | ||||||||||| Sbjct 1280284 CTCATCCTTACTGGTGTACTCTACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCC 1280343 Query 118799 CAAGTTCTTTTGATTTGACTTTG-TGTTACACGCATCCTTGTAAAGCATGTATGGCGTCC 118857 || ||||| || ||| |||| ||| || |||||||||||||||||||| || || | Sbjct 1280344 CAGGTTCTGCTG-GTTGCTTTTGCGGTTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGC 1280402 Query 118858 CCGTCTCCGTTTGGGACT 118875 | ||||| || || |||| Sbjct 1280403 CGGTCTCTGTCTGAGACT 1280420 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | || || ||||| | |||||||||| |||| ||| || || |||||| Sbjct 1276691 TAGATGTTGCTAGTATACGGCTCGATTGACTCATTGTTGCCCAGGATCTGAGCAGTGGAG 1276750 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACG 118276 || ||||||||||| |||| || || |||||||| Sbjct 1276751 GCAGTGGGCATGGGAGCCAGCAGCAGACTGTTACG 1276785 >seq2831 Length=39540 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 118739 CTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCC 118798 |||||||||| |||||||||| ||| || ||||||||||| | || |||||||| Sbjct 27438 CTCATCCTTACTGGTGTACTCTACAATCTCTGTGCACAAGTTACTGCATTTGATGGTGCC 27497 Query 118799 CAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCC 118858 || ||||| || || ||| ||| || ||||||||||| |||||||| || || || Sbjct 27498 CAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGTAGGGTGTGCC 27557 Query 118859 CGTCTCCGTTTGGGACT 118875 ||||| || || |||| Sbjct 27558 GGTCTCTGTCTGAGACT 27574 >seq987 Length=405153 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 |||| || | | |||||||||||| ||| || || || ||||| || || | |||| Sbjct 241995 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 241936 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 |||||||| | || ||| |||||| |||||||||||||| || ||||| Sbjct 241935 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCAC 241887 >seq566 Length=1676785 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 |||| || | | |||||||||||| ||| || || || ||||| || || | |||| Sbjct 224425 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 224484 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 |||||||| | || ||| |||||| |||||||||||||| || ||||| Sbjct 224485 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCAC 224533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618193415028120