Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2831 93.3 5e-14 seq15 93.3 5e-14 seq3467 91.5 2e-13 seq588 84.2 2e-11 seq362 84.2 2e-11 >seq2831 Length=39540 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 || ||||||||||| ||| | ||||||||||| | ||||| |||||||||||| | Sbjct 27463 ATCTCTGTGCACAAGTTACTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGG 27522 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 || ||||| ||||||||| |||||| || || |||||||| Sbjct 27523 TTGCAGGCATCCTTGTAGAGCATGTAGGGTGTGCCGGTCTC 27563 >seq15 Length=4212223 Score = 93.3 bits (102), Expect = 5e-14 Identities = 87/108 (81%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 |||||||| ||| ||||||||||||||||| ||||| || || | ||||||||||||| Sbjct 2564754 GCTTTTGC-TGCTGTGGAAGGAATCTTCTTTTCTGGGTCTTTTGCTTCTATTTTCTGGCT 2564812 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 || ||| | || |||||||| || || | |||||||| ||||| || Sbjct 2564813 AAAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGAGCTTAT 2564860 >seq3467 Length=20596 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 19244 CAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAG 19303 || ||||| || || ||||| | ||||||||||||||||| |||||||| ||||| || Sbjct 2606 CAAATGTCTAGTTGCTTCCTGCTTGCTATGAAGGATGACAGTATTGAGGGGATCTATGAC 2665 Query 19304 ACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGG 19351 || || ||| ||||||| | ||| || |||| | || ||||||||| Sbjct 2666 ACCCTGAAGCAGTGCGCCCTCATTTCTAAGTCTGCGGGAGGTATCGGG 2713 >seq588 Length=1544836 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 |||||||||||||| ||| | || |||||||| | ||||| ||||||||| || | Sbjct 1280309 ATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGGTTGCTTTTGCGG 1280368 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 || ||||| |||||||| |||||| || || |||||||| Sbjct 1280369 TTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGCCGGTCTC 1280409 >seq362 Length=1554118 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/108 (79%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 |||||||| ||| ||||||||||||||||| || || || || | ||||||||||||| Sbjct 600672 GCTTTTGC-TGCTGTGGAAGGAATCTTCTTTTCCGGGTCTTTTGCTTCTATTTTCTGGCT 600614 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 || ||| | || |||||||| || || | |||||||| || || || Sbjct 600613 AAAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGAACTTAT 600566 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60339 GTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTT 60398 ||| | || ||||| |||| ||||||| ||| || ||||| || ||||||||||||||| Sbjct 599910 GTGGAAAATCCTTTTGACTTCATGGAGAACATTTCCTTGGAGGGCAAGACCAACTTCTTT 599851 Query 60399 GAGAAGCGGGTCGGGGATTA 60418 |||||||| ||||| || || Sbjct 599850 GAGAAGCGAGTCGGCGAGTA 599831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548310347372880