Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq706 129 5e-25 seq9002 127 2e-24 >seq706 Length=954768 Score = 129 bits (142), Expect = 5e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| || || || | ||||||||||||||| || || Sbjct 720564 AGTCCAGTGATGTGGGCAATCATGTAGGTCAGCAGTGCGTAGCTGGCGATGTTGAAAGGC 720505 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || || || || || || | |||||| ||||||||||| | ||| ||||| | Sbjct 720504 ACACCCAGACCGATATCACCAGAGCGCTGGTACAGCTGACACGACAACTCACCGTCTGAC 720445 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCAT 30102 |||||||||||||||| || |||||||| || | ||||| Sbjct 720444 ACGTAAAACTGACACAACGCATGGCACGGGGGCAACGCCAT 720404 Score = 127 bits (140), Expect = 2e-24 Identities = 131/169 (78%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 |||||| ||||||| ||||| || ||||||||||| || || ||||| || ||||| || Sbjct 718940 CATGTCTTTGTACTCCGCTCCAAAGTGCCTCCACTGAAAGCCATACACGGGACCCAGATC 718881 Query 30283 TCCCTCTTCCCTGT-GCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 ||| || || | | ||| |||||| |||| |||| ||| || ||||| ||||| || | Sbjct 718880 TCCTTCCTCGCGATCGCT-GAAGCCGTTCTTATCCAGAAACTCCCTGGAGCCGTTAGCAT 718822 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 ||||||| | || |||||||| || |||||||||| || || || || Sbjct 718821 CCCAGATTCTCACACCCTTCTCCGACAGCTCTTTGGCATTGGTTGAACC 718773 >seq9002 Length=6234 Score = 127 bits (140), Expect = 2e-24 Identities = 131/169 (78%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 |||||| ||||||| ||||| || ||||||||||| || || ||||| || ||||| || Sbjct 1884 CATGTCTTTGTACTCCGCTCCAAAGTGCCTCCACTGAAAGCCATACACGGGACCCAGATC 1825 Query 30283 TCCCTCTTCCCTGT-GCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 ||| || || | | ||| |||||| |||| |||| ||| || ||||| ||||| || | Sbjct 1824 TCCTTCCTCGCGATCGCT-GAAGCCGTTCTTATCCAGAAACTCCCTGGAGCCGTTAGCAT 1766 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 ||||||| | || |||||||| || |||||||||| || || || || Sbjct 1765 CCCAGATTCTCACACCCTTCTCCGACAGCTCTTTGGCATTGGTTGAACC 1717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406155519173484