Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq648 109 5e-19 seq126 102 7e-17 seq706 87.8 1e-12 >seq648 Length=686451 Score = 109 bits (120), Expect = 5e-19 Identities = 131/175 (75%), Gaps = 5/175 (3%) Strand=Plus/Plus Query 3221 AATGCACAAACAACGTTTCTTCA-AGTTGT---TGATGAGCTCTTCCGAGATGGGGTAAA 3276 |||||| || ||||| |||| || ||| ||| ||||||||| |||| | || || Sbjct 221049 AATGCAGAA-CAACGCAGCTTCTTAGCTGTGGCTGAAGAGCTCTTCAGAGACGAAGTGAA 221107 Query 3277 CTGGGGGCGCATTGTTGCTTTCTTTGAGTTTGGTGGTGTTATGTGTGTGGAAAGCGTCAA 3336 ||||||||| || || |||||||||||||||||||| | ||||||||||| ||| |||| Sbjct 221108 CTGGGGGCGGATCGTCGCTTTCTTTGAGTTTGGTGGGATCATGTGTGTGGAGAGCTTCAA 221167 Query 3337 TAGAGGCATACCCTCCCTCGTTGACAACATTGCCGCGTGGATGACAGACCAGCTG 3391 | | || | |||| || || || ||||| |||||||||||| | ||| Sbjct 221168 CCGGGAGATGGCGTCCCAGGTAGATAATATTGCACACTGGATGACAGACTACCTG 221222 >seq126 Length=5399281 Score = 102 bits (112), Expect = 7e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 3251 GATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAGTTTGGT 3310 || |||||||| ||| || || ||||||||||| || || |||||||||||||||||| Sbjct 3422146 GAAGAGCTCTTTATAGACGGAGTGAACTGGGGGCGGATCGTCGCTTTCTTTGAGTTTGGT 3422087 Query 3311 GGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAACATTGCC 3370 || ||||||||||| |||||||| | | || | |||| || || || ||||| Sbjct 3422086 GGGACCATGTGTGTGGAGAGCGTCAACCGGGAGATGGCGTCCCAGGTAGATAATATTGCA 3422027 Query 3371 GCGTGGATGACAGACCAGCTG 3391 |||||||||||| | ||| Sbjct 3422026 CACTGGATGACAGACTACCTG 3422006 >seq706 Length=954768 Score = 87.8 bits (96), Expect = 1e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || || || | ||| ||||||||||| |||| || ||||||||| | || ||||| Sbjct 720564 AGTCCAGTGATGTGGGCAATCATGTAGGTCAGCAGTGCGTAGCTGGCGATGTTGAAAGGC 720505 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 ||||||||||| || || | || | |||||||| || || || | ||| |||| || Sbjct 720504 ACACCCAGACCGATATCACCAGAGCGCTGGTACAGCTGACACGACAACTCACCGTCTGAC 720445 Query 118654 ACATAAAACTGAC 118666 || |||||||||| Sbjct 720444 ACGTAAAACTGAC 720432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414318806236228