Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq475 100 2e-16 seq453 86.0 4e-12 >seq475 Length=1111492 Score = 100 bits (110), Expect = 2e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| |||| || ||||| |||| || |||||||| ||||| |||| Sbjct 249531 GACAAAGAAGGCATTCCCCCTGACCAGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAA 249590 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| ||||| || |||||||||||||||||| ||| |||||| |||| ||| Sbjct 249591 GATGGTCGCACATTGTCTGACTACAACATCCAAAAAGAGTCCACCTTGCATCTGGTGTTG 249650 Query 28003 CGT 28005 ||| Sbjct 249651 CGT 249653 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| |||| || ||||| |||| || |||||||| ||||| |||| Sbjct 248163 GACAAAGAAGGCATTCCCCCTGACCAGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAA 248222 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| ||||| || ||||||||||| |||||| ||| |||||| | || || Sbjct 248223 GATGGCCGCACATTGTCTGACTACAACATCCAGAAAGAGTCCACCTTGCATCTTGTGCTG 248282 Query 28003 CGT 28005 ||| Sbjct 248283 CGT 248285 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| |||| || ||||| |||| || |||||||| ||||| |||| Sbjct 248391 GACAAAGAAGGCATTCCCCCTGACCAGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAA 248450 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| ||||| || ||||||||||| |||||| ||| |||||| | || || Sbjct 248451 GATGGCCGCACATTGTCTGACTACAACATCCAGAAAGAGTCCACCTTGCATCTTGTGCTG 248510 Query 28003 CGT 28005 ||| Sbjct 248511 CGT 248513 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| |||| || ||||| |||| || |||||||| ||||| |||| Sbjct 248847 GACAAAGAAGGCATTCCCCCTGACCAGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAA 248906 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| ||||| || ||||||||||| |||||| ||| |||||| | || || Sbjct 248907 GATGGCCGCACATTGTCTGACTACAACATCCAGAAAGAGTCCACCTTGCATCTTGTGCTG 248966 Query 28003 CGT 28005 ||| Sbjct 248967 CGT 248969 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| |||| || ||||| |||| || |||||||| ||||| |||| Sbjct 249075 GACAAAGAAGGCATTCCCCCTGACCAGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAA 249134 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| ||||| || ||||||||||| |||||| ||| |||||| | || || Sbjct 249135 GATGGCCGCACATTGTCTGACTACAACATCCAGAAAGAGTCCACCTTGCATCTTGTGCTG 249194 Query 28003 CGT 28005 ||| Sbjct 249195 CGT 249197 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| |||| || ||||| |||| || |||||||| ||||| |||| Sbjct 249303 GACAAAGAAGGCATTCCCCCTGACCAGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAA 249362 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| ||||| || ||||||||||| |||||| ||| |||||| | || || Sbjct 249363 GATGGCCGCACATTGTCTGACTACAACATCCAGAAAGAGTCCACCTTGCATCTTGTGCTG 249422 Query 28003 CGT 28005 ||| Sbjct 249423 CGT 249425 >seq453 Length=1395482 Score = 86.0 bits (94), Expect = 4e-12 Identities = 152/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGA---AAGC 27846 ||||| || ||||| ||||| || ||||| || || || |||| ||||| |||| Sbjct 606499 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCAAGC 606440 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | || || || ||| || ||||||||||| |||| || Sbjct 606439 GAC-ACCATTGAGAAC--GTAAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCTGAT 606383 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || | || ||||| || ||||| |||| || | |||| |||| || ||| Sbjct 606382 CAGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTGACTAC 606323 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005 |||||||| |||||| ||| |||||| |||| |||||| Sbjct 606322 AACATCCAGAAAGAGTCCACCTTGCATCTGGTATTGCGT 606284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355726749367779