Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq706 134 1e-26 seq9002 105 5e-18 >seq706 Length=954768 Score = 134 bits (148), Expect = 1e-26 Identities = 134/174 (77%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| || || || | ||||||||||||||| || ||| Sbjct 720564 AGTCCAGTGATGTGGGCAATCATGTAGGTCAGCAGTGCGTAGCTGGCGATGTTGAAAGGC 720505 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || || || || || || | |||||| ||||| ||||| | ||| ||||| | Sbjct 720504 ACACCCAGACCGATATCACCAGAGCGCTGGTACAGCTGACACGACAACTCACCGTCTGAC 720445 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCT 29887 |||||||||||||||| ||||||||||| || | ||||| | | || |||| Sbjct 720444 ACGTAAAACTGACACAACGCATGGCACGGGGGCAACGCCATCACAGGCAGGTCT 720391 Score = 105 bits (116), Expect = 5e-18 Identities = 113/147 (77%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGT-GCTCGAA 30075 || ||||||||||| || || ||||| || ||||| ||||| || || | | ||| ||| Sbjct 718918 AAGTGCCTCCACTGAAAGCCATACACGGGACCCAGATCTCCTTCCTCGCGATCGCT-GAA 718860 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| |||| |||| ||| || ||||| ||||| || |||||||| | || |||||||| Sbjct 718859 GCCGTTCTTATCCAGAAACTCCCTGGAGCCGTTAGCATCCCAGATTCTCACACCCTTCTC 718800 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCC 30162 || |||||||||| || || || || Sbjct 718799 CGACAGCTCTTTGGCATTGGTTGAACC 718773 >seq9002 Length=6234 Score = 105 bits (116), Expect = 5e-18 Identities = 113/147 (77%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGT-GCTCGAA 30075 || ||||||||||| || || ||||| || ||||| ||||| || || | | ||| ||| Sbjct 1862 AAGTGCCTCCACTGAAAGCCATACACGGGACCCAGATCTCCTTCCTCGCGATCGCT-GAA 1804 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| |||| |||| ||| || ||||| ||||| || |||||||| | || |||||||| Sbjct 1803 GCCGTTCTTATCCAGAAACTCCCTGGAGCCGTTAGCATCCCAGATTCTCACACCCTTCTC 1744 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCC 30162 || |||||||||| || || || || Sbjct 1743 CGACAGCTCTTTGGCATTGGTTGAACC 1717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406008375284422