Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq566 102 7e-17 seq987 100 2e-16 seq15 95.1 1e-14 seq362 82.4 7e-11 >seq566 Length=1676785 Score = 102 bits (112), Expect = 7e-17 Identities = 103/133 (77%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 4567 AACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCT 4626 ||||| | |||||||| || ||||| || || | || | ||||||||| | ||||| | Sbjct 224423 AACCT-CATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTT 224481 Query 4627 TTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAA 4686 | || | ||| | || || |||||||| ||||| ||||| |||||||| || || |||| Sbjct 224482 TCTTCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAA 224541 Query 4687 ACGCTACTAATCG 4699 | ||||||||||| Sbjct 224542 ATGCTACTAATCG 224554 >seq987 Length=405153 Score = 100 bits (110), Expect = 2e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || |||||||| || ||||| || || | || | ||||||||| | ||||| || || Sbjct 241993 TCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCTTC 241934 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 | ||| | || || |||||||| ||||| ||||| |||||||| || || ||||| ||| Sbjct 241933 AACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATGCT 241874 Query 4692 ACTAATCG 4699 |||||||| Sbjct 241873 ACTAATCG 241866 >seq15 Length=4212223 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || |||||||| || || || || || || || | ||| ||||| | |||||||| || Sbjct 2564872 TCATCTCTGCTGATAAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCTTT 2564813 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| || |||| ||||| |||||||||||||| || ||||| || || ||||| || Sbjct 2564812 AGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCC 2564753 Query 4692 AC 4693 || Sbjct 2564752 AC 2564751 >seq362 Length=1554118 Score = 82.4 bits (90), Expect = 7e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || |||| || || ||||| || | || || ||||||||||| || || ||||| || Sbjct 601110 GGATCTTTGATGTAGGTGTCAATCAACAGACTGTACATTTCAGAGTGGATGTTTTCCATG 601169 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 |||||||| || ||||| ||||| | ||||| || ||||| ||||| | | ||||| Sbjct 601170 GCAATCTGGAAACCGTAGAAGCAACGGGCTTCAGTCACTTGGACTTCCTGAGTAAATC 601227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426886813630241