Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq124 114 2e-20 seq3467 109 8e-19 seq2831 104 3e-17 seq588 100 4e-16 >seq124 Length=2461953 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||| ||||| ||||||||||| ||||| || ||| ||| ||||||| | ||| ||| Sbjct 435253 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCATAAAACAGATCTCTAGCTCTCTGT 435312 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 || || || || |||||||||||||| || || || || | ||| ||| ||||||| || Sbjct 435313 TCCTCTTTACCAGTATTCTTTTTAAGCTCTAGGAAGTCAAAAATGTCAAAATGCCAGGGC 435372 Query 78123 TCTAGATATATTGCCATAACTCCAGGTC 78150 || || || || || | | |||| |||| Sbjct 435373 TCCAGGTACATAGCAAAAGCTCCTGGTC 435400 >seq3467 Length=20596 Score = 109 bits (120), Expect = 8e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||| ||||| ||||||||||| ||||| || || ||| ||||||| | ||| ||| Sbjct 3145 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCTCTGT 3086 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 || || || || || ||||||||||| || || || || | ||| ||| ||||||| ||| Sbjct 3085 TCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCAGGGT 3026 Query 78123 TCTAGATATATTGCCATAACTCCAGGTC 78150 || || || || || | | |||| |||| Sbjct 3025 TCCAGGTACATGGCAAAAGCTCCTGGTC 2998 >seq2831 Length=39540 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 76843 CCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATAT 76902 |||| |||| || ||||| |||||||| ||||||||| ||| | || || || || | Sbjct 25061 CCAGCTTCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCGATGT 25120 Query 76903 GAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAA 76962 | || || | ||||| || || || ||||| |||||||| || || ||||| |||| | Sbjct 25121 GGATGTTGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGA 25180 Query 76963 TGGTCTTTTGAGGAATTTCCCA 76984 |||||||||||| || ||||| Sbjct 25181 TGGTCTTTTGAGAGATCTCCCA 25202 >seq588 Length=1544836 Score = 100 bits (110), Expect = 4e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || ||||| |||||||| ||||||||| ||| | || || || || || || | Sbjct 1276201 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCAATGTGGATGT 1276260 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | ||||| || || || ||||| |||||||| || || ||||| |||| ||||||| Sbjct 1276261 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 1276320 Query 76969 TTTGAGGAATTTCCCAAATAGTTTT 76993 |||| | || ||||| | ||| || Sbjct 1276321 TTTGCGAGATCTCCCACACAGTCTT 1276345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694397210549280