Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq124 109 8e-19 seq3467 105 1e-17 seq15 102 1e-16 seq2831 98.7 1e-15 seq588 95.1 2e-14 seq987 87.8 3e-12 seq566 87.8 3e-12 >seq124 Length=2461953 Score = 109 bits (120), Expect = 8e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 76598 ACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGT 76657 || || ||||| ||||||||||| ||||| || ||| ||| ||||||| | ||| || Sbjct 435253 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCATAAAACAGATCTCTAGCTCTCTGT 435312 Query 76658 TCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGT 76717 || || || || |||||||||||||| |||||||| || | ||| ||| ||||||| || Sbjct 435313 TCCTCTTTACCAGTATTCTTTTTAAGCTCTAGGAAGTCAAAAATGTCAAAATGCCAGGGC 435372 Query 76718 TCTAGATATATCGCCATAACACCCGGTC 76745 || || || || || | | | || |||| Sbjct 435373 TCCAGGTACATAGCAAAAGCTCCTGGTC 435400 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | ||||||||| || ||||||||||| || ||||| || |||||| Sbjct 435955 GTGCCGGCATTGAAGAGTGTAGGAGAAGCGTGAGTGAACCACTTCTCAGAGAGCAGATTG 436014 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || ||||| ||| |||| | || ||| | ||| ||||| || | || | ||||| | Sbjct 436015 TAGGTTTCTATAGCTGCCGCAATGTCCTCCTTATGGATTCCCACGGACACTCTCATCAGC 436074 Query 77114 ATATGCTGAGGTCGTTC 77130 || || || || || || Sbjct 436075 ATGTGTTGTGGCCGCTC 436091 >seq3467 Length=20596 Score = 105 bits (116), Expect = 1e-17 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 76598 ACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGT 76657 || || ||||| ||||||||||| ||||| || || ||| ||||||| | ||| || Sbjct 3145 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCTCTGT 3086 Query 76658 TCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGT 76717 || || || || || ||||||||||| |||||||| || | ||| ||| ||||||| ||| Sbjct 3085 TCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCAGGGT 3026 Query 76718 TCTAGATATATCGCCATAACACCCGGTC 76745 || || || || || | | | || |||| Sbjct 3025 TCCAGGTACATGGCAAAAGCTCCTGGTC 2998 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || || || || | ||||||||| |||||||||||||| || ||||| || || ||| Sbjct 2455 GTGCCAGCGTTGAAGAGTGTAGGAGAAGCATGAGTGAACCACTTCTCAGACAGCAGGTTG 2396 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || ||||| ||| |||| | || ||| | ||| ||||| |||| || | ||||| | Sbjct 2395 TAGGTTTCTATAGCTGCCGCAATGTCCTCCTTATGGATTCCCACAGACACTCTCATCAGC 2336 Query 77114 ATATGCTGAGGTCGTTC 77130 || || || || || || Sbjct 2335 ATGTGTTGTGGCCGCTC 2319 >seq15 Length=4212223 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| || || | || || || || ||||| |||||||| ||||| | ||| || Sbjct 2564872 TCATCTCTGCTGATAAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCTTT 2564813 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| || |||| || ||||| ||||||||||| || ||||| ||||| || || || Sbjct 2564812 AGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCC 2564753 Query 46774 ACAAGTCTCTCTCC 46787 || | |||||| || Sbjct 2564752 ACCACTCTCTCCCC 2564739 >seq2831 Length=39540 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 75438 CCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATAT 75497 |||| |||| || ||||| |||||||| || |||||| ||| | || || || || | Sbjct 25061 CCAGCTTCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCGATGT 25120 Query 75498 GAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAA 75557 | || || | ||||| || || || ||||| |||||||| || || ||||| |||| | Sbjct 25121 GGATGTTGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGA 25180 Query 75558 TGGTCTTTTGAGGAATTTCCCA 75579 |||||||||||| || ||||| Sbjct 25181 TGGTCTTTTGAGAGATCTCCCA 25202 >seq588 Length=1544836 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || ||||| |||||||| || |||||| ||| | || || || || || || | Sbjct 1276201 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCAATGTGGATGT 1276260 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | ||||| || || || ||||| |||||||| || || ||||| |||| ||||||| Sbjct 1276261 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 1276320 Query 75564 TTTGAGGAATTTCCCAAATAGTTTT 75588 |||| | || ||||| | ||| || Sbjct 1276321 TTTGCGAGATCTCCCACACAGTCTT 1276345 >seq987 Length=405153 Score = 87.8 bits (96), Expect = 3e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 47122 ATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATA 47181 ||||| || || ||| ||||||||||||| || | |||| ||| ||||| ||||| || Sbjct 239009 ATATCCACCTCCTCAACTGTCCAGAATGAAGCTTGAGCTTGTTTGTACATTTTCCAGATG 238950 Query 47182 TCACGATATTGGATCGGAAAAATAACAAATCTATTTGGAtttt 47224 ||| |||| || || || ||||| ||||||| ||||| |||| Sbjct 238949 TCAGGATACTGAATAGGGAAAATGACAAATCGCTTTGGGTTTT 238907 >seq566 Length=1676785 Score = 87.8 bits (96), Expect = 3e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 47122 ATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATA 47181 |||| || || ||| | ||||||||||| |||| |||| ||| ||||| ||||| || Sbjct 226382 ATATTCACCTCCTCAACAGTCCAGAATGAAGCCTGAGCTTGTTTGTACATTTTCCAGATG 226441 Query 47182 TCACGATATTGGATCGGAAAAATAACAAATCTATTTGGAtttt 47224 ||| |||| || || |||||||| ||||||| ||||| |||| Sbjct 226442 TCAGGATACTGAATAGGAAAAATGACAAATCGCTTTGGGTTTT 226484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712655669384640