Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq260 156 6e-33 seq473 152 7e-32 seq6096 120 4e-22 seq454 120 4e-22 seq188 118 2e-21 seq121 114 2e-20 seq95 111 2e-19 >seq260 Length=1225460 Score = 156 bits (172), Expect = 6e-33 Identities = 175/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 ||||| ||| | || ||||| | || || ||||| || || ||||||||| | ||||| Sbjct 1133501 TTGACAATCTCAAAGCCCACTTTGCCACCAAAGGTACTTGGTTTCCAGTACTCAGGGGAA 1133442 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 |||||| || |||| || |||||||||||| | || || |||| || | ||| || Sbjct 1133441 CAGATGGGATTTCCCATAAGTCCTTTGAGGGAGTAGGGGGCACCCATTTCCACCATGGTC 1133382 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || || ||||||||||||| | |||||| || |||| || || || || ||||||||| Sbjct 1133381 TCCCCAAAGATGGCGTTGGTCCTGGGCTTCTCAACCAGCAAGCCAGTATAAAGCTCCACA 1133322 Query 8531 GCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || || || | |||||| | | ||||| ||||| ||||||||||||||| Sbjct 1133321 GCATCCACATGTCCGTACAACTCTTCAAGTTCAGCAGCCATCTCCTTTTCTCCT 1133268 Score = 127 bits (140), Expect = 3e-24 Identities = 175/245 (71%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || |||| |||||| || |||||||| ||||| ||||||| ||| || ||||| Sbjct 1130325 TCACCAATAAGGATGAGCCGTGTGGTCTGAAACAGCCTCTCGTCATCCCAGTCAGGATGC 1130266 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || | || || | ||| ||||| | ||||||||| | |||||||| || || |||||| Sbjct 1130265 TCCTTCTTTAGTATATCACACACTCGGTTGTGTTCACGCAGCCAGATGGTAGCATACATC 1130206 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 ||||| || || ||||| ||||| ||||| ||||| || || | || || || Sbjct 1130205 ATGAGTCCTGGAACCAGTCCAAAGGCCTCGTGACCCACGGCAAAGCGACGAGACTCAGGT 1130146 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 || | ||||| ||| ||||| || || || || |||| | || ||||| | ||| Sbjct 1130145 ACATGAGGAGGGTAGTGCATGTCTACTTGAACCTCACTGACTGTCGGAGGATAAACCTCA 1130086 Query 9472 CCGTC 9476 || || Sbjct 1130085 CCATC 1130081 Score = 127 bits (140), Expect = 3e-24 Identities = 175/245 (71%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || |||| |||||| || |||||||| ||||| ||||||| ||| || ||||| Sbjct 1132367 TCACCAATAAGGATGAGCCGTGTGGTCTGAAACAGCCTCTCGTCATCCCAGTCAGGATGC 1132308 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || | || || | ||| ||||| | ||||||||| | |||||||| || || |||||| Sbjct 1132307 TCCTTCTTTAGTATATCACACACTCGGTTGTGTTCACGCAGCCAGATGGTAGCATACATC 1132248 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 ||||| || || ||||| ||||| ||||| ||||| || || | || || || Sbjct 1132247 ATGAGTCCTGGAACCAGTCCAAAGGCCTCGTGACCCACGGCAAAGCGACGAGACTCAGGT 1132188 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 || | ||||| ||| ||||| || || || || |||| | || ||||| | ||| Sbjct 1132187 ACATGAGGAGGGTAGTGCATGTCTACTTGAACCTCACTGACTGTCGGAGGATAAACCTCA 1132128 Query 9472 CCGTC 9476 || || Sbjct 1132127 CCATC 1132123 Score = 114 bits (126), Expect = 2e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 8424 CCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGG 8483 |||| || |||||||||||| | || || |||| || | ||| |||| || ||||||| Sbjct 1131386 CCATAAGTCCTTTGAGGGAGTAGGGGGCACCCATTTCCACCATGGTCTCCCCAAAGATGG 1131327 Query 8484 CGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTC 8543 |||||| | |||||| || |||| || || || || ||||||||||| || || | || Sbjct 1131326 CGTTGGTCCTGGGCTTCTCAACCAGCAAGCCAGTATAAAGCTCCACAGCATCCACATGTC 1131267 Query 8544 CGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 |||| | | ||||| ||||| ||||||||||||||| Sbjct 1131266 CGTACAACTCTTCAAGTTCAGCAGCCATCTCCTTTTCTCCT 1131226 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||| ||| || | || ||||| |||||||| || || ||||| || | | | | Sbjct 1129171 TCACCTGCGACTCCCATTGGTGTTGGGCAATCGTGTGGGACAGGAGGCAGTGTGCGAGTG 1129112 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || ||||||||||| ||| | |||||||||||| ||| | ||||| || ||| ||| Sbjct 1129111 TAGTAGGAGAGATTAGAGTAGGCTTCCCAGCTTTTGTAACCATAGTCAGCATTGAATAAA 1129052 Query 10028 GGAGGGCTGTCAATCAAATCGG 10049 || ||||| ||||||| || || Sbjct 1129051 GGTGGGCTATCAATCAGATGGG 1129030 >seq473 Length=2396145 Score = 152 bits (168), Expect = 7e-32 Identities = 174/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 ||||| ||| | || ||||| | || || |||||||| || ||||||||| | ||||| Sbjct 2321993 TTGACAATCTCAAAGCCCACTTTGCCACCAAAGGTGCTTGGTTTCCAGTACTCTGGGGAA 2321934 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 |||||| || |||| || |||||||||||| | || || |||| || | ||| || Sbjct 2321933 CAGATGGGATTTCCCATAAGTCCTTTGAGGGAGTAGGGGGCACCCATTTCCACCATGGTC 2321874 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || || ||||||||||||| | |||||| || |||| | || | || ||||||||| Sbjct 2321873 TCCCCAAAGATGGCGTTGGTCCTGGGCTTCTCAACCAGCAGCCCAGCATAAAGCTCCACA 2321814 Query 8531 GCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || || || || ||||| | | ||||| ||||| ||||||||||||||| Sbjct 2321813 GCATCCACATCCCCGTACAACTCTTCAAGTTCAGCAGCCATCTCCTTTTCTCCT 2321760 Score = 136 bits (150), Expect = 6e-27 Identities = 177/245 (72%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || |||| |||||| || | |||||| ||||| ||||||| ||| || ||||| Sbjct 2320850 TCACCAATAAGGATGAGCCGTGCGGTCTGAAACAGCCTCTCGTCATCCCAGTCAGGATGC 2320791 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || || || || | ||| ||||| | ||||||||| | |||||||| ||||| |||||| Sbjct 2320790 TCCTGCTTTAGTATATCACACACTCGGTTGTGTTCACGCAGCCAGATGGTGGCATACATC 2320731 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 ||||| ||||| ||||| ||||| || || ||||| || || | || | || || Sbjct 2320730 ATGAGTCCAGGAACCAGTCCAAAGGCTTCGTGACCAACGGCAAAGCGACGGGACTCAGGT 2320671 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 || | ||||| ||| ||||| || || || || |||| | || ||||| | ||| Sbjct 2320670 ACATGAGGAGGGTAGTGCATGTCTACTTGAACCTCACTGACTGTCGGAGGATAAACCTCA 2320611 Query 9472 CCGTC 9476 || || Sbjct 2320610 CCATC 2320606 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||| ||| || | || ||||| |||||||| || || ||||| || | | | | Sbjct 2319685 TCACCTGCGACTCCCATTGGTGTTGGGCAATCGTGCGGGACAGGAGGCAGCGTGCGAGTG 2319626 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || ||||||||||| ||| | |||||||||||| ||| | ||||| || ||| |||| Sbjct 2319625 TAGTAGGAGAGATTTGAGTAGGCTTCCCAGCTTTTGTAACCATAGTCAGCATTGAATATA 2319566 Query 10028 GGAGGGCTGTCAATCAAATCGG 10049 |||||||| ||||||| || || Sbjct 2319565 GGAGGGCTATCAATCAGATGGG 2319544 >seq6096 Length=10429 Score = 120 bits (132), Expect = 4e-22 Identities = 172/240 (72%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 || ||||| ||||| | |||||||| ||||| ||||| || | ||| ||||||||| Sbjct 3299 CCTATAATAATGAGCCTGGTGGTCTGAAACAGCTGCTCATCCCCCCAGGTAGGATGTTCT 3358 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 ||||||| | ||| ||||| | |||||| || | ||||| | ||||||||||| || Sbjct 3359 TGTTTCAAGATATCACACACACGGTTGTGCTCACGCAGCCACAAGGTGGCGTACATACTG 3418 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCG-GGCAC 9413 || || || | ||||||||| | ||||| || | ||||| || || | | || || Sbjct 3419 AGACCCGGCAGCAGGCCAAACACTTCTTGCCCAATGGCCAGCTGC-TGCTCCGGTGGGAC 3477 Query 9414 TTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACC 9473 ||||| ||| |||| | ||| | | ||| || | |||||||||||| ||||| Sbjct 3478 AGACGGAGGGTAGCTCATTTTGACCGGTGCATCTAGCACTGTGGGGGGATACATCTCACC 3537 >seq454 Length=846641 Score = 120 bits (132), Expect = 4e-22 Identities = 172/240 (72%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 || ||||| ||||| | |||||||| ||||| ||||| || | ||| ||||||||| Sbjct 469577 CCTATAATAATGAGCCTGGTGGTCTGAAACAGCTGCTCATCCCCCCAGGTAGGATGTTCT 469636 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 ||||||| | ||| ||||| | |||||| || | ||||| | ||||||||||| || Sbjct 469637 TGTTTCAAGATATCACACACACGGTTGTGCTCACGCAGCCACAAGGTGGCGTACATACTG 469696 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCG-GGCAC 9413 || || || | ||||||||| | ||||| || | ||||| || || | | || || Sbjct 469697 AGACCCGGCAGCAGGCCAAACACTTCTTGCCCAATGGCCAGCTGC-TGCTCCGGTGGGAC 469755 Query 9414 TTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACC 9473 ||||| ||| |||| | ||| | | ||| || | |||||||||||| ||||| Sbjct 469756 AGATGGAGGGTAGCTCATTTTGACCGGTGCATCTAGCACTGTGGGGGGATACATCTCACC 469815 Score = 86.0 bits (94), Expect = 9e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || || || || ||||||||||||||| | |||||||| || || ||||||| ||| Sbjct 464220 CCCCCAAATGTACTGGGCTTCCAGTACTCAGGGGAGCAAATAGGATTTCCCATGAGACCT 464279 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 || ||||| || || ||||||| || | ||||| ||||| || || | | || Sbjct 464280 TTTAGGGAAAATGGGGCCCCCATTTCTACCATGCTTTCACCAAATATCACACCAGATCGT 464339 Query 8495 GGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCC 8554 | ||| || | ||| | | | ||| | ||||| ||| || | || || || || || Sbjct 464340 GTCTTCTCTAGCAAAAGAGCTGGGTAGAACTCCATAGCATCAATATCACCATACAGTTCC 464399 Query 8555 CTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 ||||| ||| ||||| | ||||||||| Sbjct 464400 TCTAGTTCTTTAGCCATCTCTTCTTCTCCTGT 464431 >seq188 Length=1334943 Score = 118 bits (130), Expect = 2e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||||| | || || || ||||| ||| ||||||| | || || || || | || Sbjct 25463 AATCCCACTTTCCCACCAAATGTGCTAGGCATCCAGTATTCAGGAGAACAAATAGCATTT 25404 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 |||||||||||||||| ||| | || || |||| ||| | || |||| || || | Sbjct 25403 CCCATGAGGCCTTTGAGAGAGTAGGGCGCTCCCATCTCCACCATAGTCTCCCCAAACACA 25344 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAGCTCCACAGCCTCGACGTC 8541 | |||||| | ||| || ||||| ||||| || || |||||||| || || || | || Sbjct 25343 GAGTTGGGTCTGGGTTTCTCCAC-AAGAAGGCCAGTATACAGCTCGACCGCATCTATGTG 25285 Query 8542 TCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGTTTTA 8590 ||||| || | | | |||||| || | |||||| |||||||||||| Sbjct 25284 ACCGTACAGCTGCTTCATTTCGGCTGCCAGCTCCTTGTCTCCTGTTTTA 25236 >seq121 Length=2434894 Score = 114 bits (126), Expect = 2e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||||| | || || || ||||| ||| ||||||| | || || || || | || Sbjct 1927201 AATCCCACTTTCCCACCAAATGTGCTCGGCATCCAGTATTCAGGAGAACAAATAGCATTT 1927142 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 ||||||| |||||||| ||| | || || |||| ||| | || |||| || || | Sbjct 1927141 CCCATGAGACCTTTGAGAGAGTAGGGGGCTCCCATCTCTACTATAGTCTCCCCAAACACA 1927082 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAGCTCCACAGCCTCGACGTC 8541 |||||||| | ||| || ||||| ||||| || | |||||||| || || || | || Sbjct 1927081 GCGTTGGGTCTGGGTTTCTCCAC-AAGAAGGCCAGGATACAGCTCAACCGCGTCTATGTG 1927023 Query 8542 TCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGTTTTAT 8591 ||||| || | | | |||||| || | |||||| ||||||||||||| Sbjct 1927022 ACCGTACAGCTGCTTCATTTCGGCTGCCAGCTCCTTGTCTCCTGTTTTAT 1926973 >seq95 Length=2768803 Score = 111 bits (122), Expect = 2e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 || ||||| ||||| | |||||||| ||||| ||||| || | ||| |||||||||| Sbjct 436783 CCTATAATAATGAGCCTGGTGGTCTGAAACAGCTGCTCATCCCCCCAGGTTGGATGTTCT 436842 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 |||||||| | ||| ||||| | |||||| || | ||||| | |||||||||| || Sbjct 436843 TGTTTCAGGATATCACACACACGGTTGTGCTCACGCAGCCACAAGGTGGCGTACAAACTG 436902 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAG 9395 || || || | ||| ||||| | ||||| || | ||||| Sbjct 436903 AGACCCGGCAGCAGTCCAAACACTTCTTGCCCAATGGCCAG 436943 Score = 86.0 bits (94), Expect = 9e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || || || || ||||||||||||||| | |||||||| || || ||||||||||| Sbjct 426809 CCCCCAAATGTACTGGGCTTCCAGTACTCAGGGGAGCAAATAGGATTTCCCATGAGGCCT 426868 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 || ||||| || || ||||||| || | ||||| || || || || | || || Sbjct 426869 TTTAGGGAAAATGGGGCCCCCATTTCCACCATGCTTTCGCCAAATATCACACCAGGTCGT 426928 Query 8495 GGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCC 8554 | ||| || | ||| | | | ||| | ||||| ||| || | | || || || | Sbjct 426929 GTCTTCTCTAGCAAAAGAGCTGGGTAGAACTCCAGAGCATCAATATGACCATACAGTTTC 426988 Query 8555 CTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 ||||| ||| ||||| ||||||||||| Sbjct 426989 TCTAGTTCTTTAGCCATCTCTTTTTCTCCTGT 427020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716596528054080