Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq36865 87.8 2e-12
seq34520 84.2 2e-11
seq19765 84.2 2e-11
seq3015 82.4 8e-11
>seq36865
Length=2971667
Score = 87.8 bits (96), Expect = 2e-12
Identities = 104/140 (74%), Gaps = 2/140 (1%)
Strand=Plus/Minus
Query 16979 TGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCT 17038
||||| |||| ||||||||||| ||||| || || | || | ||||||||| |||
Sbjct 1669570 TGTAA--CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCT 1669513
Query 17039 CGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGAT 17098
| |||||| ||||| | || || || || || ||||| ||||| || || || || | |
Sbjct 1669512 CTTTTCTTCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCT 1669453
Query 17099 GCAAACGCGATTAATCGTTC 17118
||||| || | |||||| ||
Sbjct 1669452 GCAAATGCTACTAATCGCTC 1669433
>seq34520
Length=2775569
Score = 84.2 bits (92), Expect = 2e-11
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293
|| || || || || | || ||||||||||| ||||| ||||| |||||||| |||||
Sbjct 504769 ATGTAGGTGTCAATCAACAGACTGTACATTTCAGAGTGGATGTTTTCCATGGCAATCTGG 504710
Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC 17332
|| ||||| ||||| |||||||| | | ||| ||||||
Sbjct 504709 AAACCGTAGAAGCAGCGGGCTTCAGTCACTTGGACTTCC 504671
>seq19765
Length=1114994
Score = 84.2 bits (92), Expect = 2e-11
Identities = 91/121 (75%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045
|||| ||||||||||||||||| || || || || | || ||||| ||||| ||||
Sbjct 414477 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 414418
Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105
||||||| || || | || || |||||| ||||||| || || || || | ||||| |
Sbjct 414417 TTAACCAGAAAATAGAAGCAAAAGACCCAAAAAAGAAGATTCCTTCCACAGCAGCAAAAG 414358
Query 17106 C 17106
|
Sbjct 414357 C 414357
>seq3015
Length=1951583
Score = 82.4 bits (90), Expect = 8e-11
Identities = 95/128 (74%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045
|||| ||||||||||| ||||| || || | || | ||||||||| |||| |||||
Sbjct 197199 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 197258
Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105
| ||||| | || || || || || ||||| ||||| || || || || | |||||| |
Sbjct 197259 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 197318
Query 17106 CGATTAAT 17113
| | ||||
Sbjct 197319 CTACTAAT 197326
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 516483512327640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |