Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq15552 118 1e-21 seq44218 113 5e-20 seq14570 113 5e-20 seq159452 105 8e-18 seq36865 96.9 4e-15 seq3015 96.9 4e-15 seq19765 84.2 3e-11 >seq15552 Length=1137653 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||| ||||| ||||||||||| ||||| || || ||| |||||||| | ||| Sbjct 1132512 CTCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCT 1132453 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 |||||||| || || || ||||||||||| || ||||| | | ||| ||| ||||||| Sbjct 1132452 CTGTTCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCA 1132393 Query 54145 CGGTTCCAAGTATATGGTCATAACTCCAGG 54174 || |||| ||| |||| | | |||| || Sbjct 1132392 GGGCTCCAGGTACATGGCAAAAGCTCCTGG 1132363 Score = 102 bits (112), Expect = 1e-16 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| || || || ||||| || || |||||| ||| | || || || || ||||| | Sbjct 1137076 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCAATGTGGATGT 1137017 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | || || || || || ||||||||||| |||||||||||||| |||| ||| |||| Sbjct 1137016 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 1136957 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 53043 |||| | || ||||| | || ||||| | | ||| | || ||||| Sbjct 1136956 TTTGCGAGATCTCCCACACGGTCTTATACAGTTCCTTCAGGTCATCTGG 1136908 >seq44218 Length=785574 Score = 113 bits (124), Expect = 5e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||| ||||| ||||||||||| ||||| || || ||| |||||||| | || Sbjct 784487 CTCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCATAAAACAGATCTCTAGCTCG 784546 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 |||||||| || || |||||||||||||| || ||||| | | ||| ||| ||||||| Sbjct 784547 CTGTTCCTCTTTACCAGTATTCTTTTTAAGCTCTAGGAAGTCAAAAATGTCAAAATGCCA 784606 Query 54145 CGGTTCCAAGTATAT 54159 || |||| ||| || Sbjct 784607 GGGCTCCAGGTACAT 784621 >seq14570 Length=4705 Score = 113 bits (124), Expect = 5e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||| ||||| ||||||||||| ||||| || || ||| |||||||| | || Sbjct 621 CTCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCATAAAACAGATCTCTAGCTCG 680 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 |||||||| || || |||||||||||||| || ||||| | | ||| ||| ||||||| Sbjct 681 CTGTTCCTCTTTACCAGTATTCTTTTTAAGCTCTAGGAAGTCAAAAATGTCAAAATGCCA 740 Query 54145 CGGTTCCAAGTATAT 54159 || |||| ||| || Sbjct 741 GGGCTCCAGGTACAT 755 >seq159452 Length=1242 Score = 105 bits (116), Expect = 8e-18 Identities = 127/170 (75%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| || || || ||||| || || |||||| ||| | || || || || ||||| | Sbjct 578 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCGATGTGGATGT 519 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | || || || || || ||||||||||| |||||||||||||| |||| ||| |||| Sbjct 518 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 459 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 53043 |||| | || ||||| | ||| ||||| | ||| ||| | || ||||| Sbjct 458 TTTGAGAGATCTCCCACACAGTCTTATACAGCTC-CTTCAGGTCATCTGG 410 >seq36865 Length=2971667 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| || || | ||| ||||| | |||||||||||||| ||||| | || | Sbjct 1669565 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 1669506 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | ||| | |||| |||||||||||||| ||||| || ||||| ||||| ||||| | Sbjct 1669505 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 1669446 Query 24277 C 24277 | Sbjct 1669445 C 1669445 Score = 91.5 bits (100), Expect = 2e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 24627 ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 24686 |||| ||| || || |||||||| ||||| |||| || | ||| ||||| ||||||||| Sbjct 1665715 ATATTCACCTCCTCAACTGTCCAGAATGAAGCCTGAGCTTGTTTGTACATTTTCCAGATG 1665656 Query 24687 TCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 24729 ||| ||| ||||| || ||||| ||||||| ||||| |||| Sbjct 1665655 TCAGAATACTGAATAGGGAAAATGACAAATCGCTTTGGGTTTT 1665613 >seq3015 Length=1951583 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| || || | ||| ||||| | |||||||||||||| ||||| | || | Sbjct 197199 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 197258 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | ||| | |||| |||||||||||||| ||||| || ||||| ||||| ||||| | Sbjct 197259 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 197318 Query 24277 C 24277 | Sbjct 197319 C 197319 Score = 96.9 bits (106), Expect = 4e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 24627 ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 24686 |||| ||| || || |||||||| ||||| |||| || | ||| ||||| ||||||||| Sbjct 198212 ATATTCACCTCCTCAACTGTCCAGAATGAAGCCTGAGCTTGTTTGTACATTTTCCAGATG 198271 Query 24687 TCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 24729 ||| ||| ||||| |||||||| ||||||| ||||| |||| Sbjct 198272 TCAGAATACTGAATAGGAAAAATGACAAATCGCTTTGGGTTTT 198314 >seq19765 Length=1114994 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 24645 GTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGA 24704 ||||| || || ||||||||||| || ||||| | |||||||||||| || ||||||||| Sbjct 413419 GTCCAGAAGGAGGCCTCTGCCTTCTTGTACATCTGCCAGATGTCATGGTACTGAATTGGA 413360 Query 24705 AAAATAACAAA 24715 ||||| ||||| Sbjct 413359 AAAATGACAAA 413349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592503186797040