Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq8150 145 7e-30 seq21577 140 3e-28 >seq8150 Length=1005622 Score = 145 bits (160), Expect = 7e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||||| || || |||||||| ||| || ||||| ||| || Sbjct 148767 CACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTC 148826 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || |||||| |||| |||||||||||||| ||||| ||||| ||||||||| Sbjct 148827 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTG 148886 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | || | |||||| || ||| ||||| | ||| | || || Sbjct 148887 GATTTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTT 148946 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || || ||||| |||||||| Sbjct 148947 GCCAGTCAGCGTCTTCACAAAGATCTGCAT 148976 Score = 89.7 bits (98), Expect = 4e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| || || |||||||| || | ||||| ||| || ||||| Sbjct 148502 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATCTTCCAGCTGC 148561 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || |||||| |||| ||||||||||| || ||||| ||||| |||||||| || || Sbjct 148562 TTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTG 148621 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | || | |||||| || ||| ||||||| || | || ||||| ||| Sbjct 148622 GCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGGGATGGTCTTGCCAGTC 148681 Query 118716 AG 118717 || Sbjct 148682 AG 148683 >seq21577 Length=2421781 Score = 140 bits (154), Expect = 3e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || || || || || ||||||||||| || ||||| |||||| Sbjct 24133 CACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATCCTC 24192 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || |||||| |||| ||||||||||| || ||||| ||||| ||||||||| Sbjct 24193 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTG 24252 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | || | |||||| || ||| ||||| | ||| | || || Sbjct 24253 GATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTT 24312 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || || ||||| |||||||| Sbjct 24313 GCCAGTCAGGGTCTTCACAAAGATCTGCAT 24342 Score = 132 bits (146), Expect = 4e-26 Identities = 155/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || || || || ||||||||||| || ||||| ||| || | Sbjct 25047 CAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATCTTCCA 25106 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 ||| || |||||| |||| |||||||||||||| ||||| ||||| ||||||||| | Sbjct 25107 ACTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGA 25166 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 |||| ||| || | || | |||||| || ||| ||||||| ||| | || |||| Sbjct 25167 TTTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTTGC 25226 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | ||||| || || ||||| |||||||| Sbjct 25227 CAGTCAGCGTCTTCACAAAGATCTGCAT 25254 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||||| || || |||||||| || || |||||| ||| || Sbjct 24817 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCATCTTC 24876 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || || |||| ||||||||||| || ||||| ||||| ||||||||| Sbjct 24877 CAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTG 24936 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | || | |||||| || ||| ||||||| ||| | || || Sbjct 24937 GATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTT 24996 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || || || || |||||||| Sbjct 24997 GCCAGTCAGGGTCTTGACGAAGATCTGCAT 25026 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||| || ||||| ||| || ||||| || ||| Sbjct 23918 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCTTCCAGCTGCTTGCCA 23977 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| |||||||||||||| ||||| ||||| |||||||| || || || Sbjct 23978 GCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 24037 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| || ||| ||||| | ||| | || ||||| |||| || Sbjct 24038 ACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTC 24097 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 24098 TTCACAAAGATCTGCAT 24114 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| || || |||||||| ||| || ||||| |||||| ||||| Sbjct 24368 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCCTCCAGCTGC 24427 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || |||||| |||| ||||||||||| || ||||| ||||| ||||| ||| || || Sbjct 24428 TTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCTTGGATCTTG 24487 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | || | |||||| || ||| || || | || | ||||| || || Sbjct 24488 GCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAAAGTGATTGTTTTTCCAGTT 24547 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| |||||||| Sbjct 24548 AGCGTCTTGACAAAGATCTGCAT 24570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432962366783716