Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq8150 113 3e-20 seq21577 107 1e-18 seq12251 107 1e-18 seq32410 93.3 3e-14 >seq8150 Length=1005622 Score = 113 bits (124), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | ||| || ||||| ||||||||||||||||| || | || Sbjct 148765 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 148824 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| ||||| || || |||||||| || || | || |||||||| Sbjct 148825 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCT 148884 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || ||| ||||| | || | || | ||| | | || || || | |||||||| Sbjct 148885 TGGAT-TTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGT 148943 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| || || || |||||||||||||||||| Sbjct 148944 CTTGCCAGTCAGCGTCTTCACAAAGATCTGCATC 148977 >seq21577 Length=2421781 Score = 107 bits (118), Expect = 1e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | || ||| ||||| |||||||| || |||||| || | || Sbjct 24131 AGCACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATCC 24190 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| ||||| || || ||||||||||| || | || |||||||| Sbjct 24191 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 24250 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || ||| ||||| | | | || | ||| | | || || || | |||||||| Sbjct 24251 TGGAT-TTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGT 24309 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || ||||||||||||||||| Sbjct 24310 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 24342 Score = 104 bits (114), Expect = 2e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| |||||||| || |||||| || | || |||||||||||||| ||||| Sbjct 25063 TTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATCTTCCAACTGCTTGCCAGCGAA 25122 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 || || |||||||| || || | || |||||||| || ||| ||||| | || Sbjct 25123 GATCAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGAT-TTTAGCTTTCACAT 25181 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | ||| | | || || || | |||||||| ||||| || || || |||| Sbjct 25182 TCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTCA 25241 Query 34377 CAAAGATCTGCATC 34390 |||||||||||||| Sbjct 25242 CAAAGATCTGCATC 25255 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||||||||||||| || | || |||| ||||||||| ||||| Sbjct 23924 TCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAG 23983 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || |||||||| || || | || |||||||| ||||| ||| | | Sbjct 23984 ATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTC 24043 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | | || || || | |||||||| ||||| || | || |||||| Sbjct 24044 TCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACA 24103 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 24104 AAGATCTGCAT 24114 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| ||||||||||||||||| || | || |||||||| ||||| ||||| Sbjct 24608 TCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAG 24667 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | ||||||||||| || | || ||||| || ||||| ||| | | Sbjct 24668 ATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCTTGGATCTTGGCCTTGACGTTC 24727 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | | ||| || || | ||||||||||| || || | || |||||| Sbjct 24728 TCAATGGTGTCACTTGGTTCCACCTCAAGAGTGATGGTTTTACCAGTCAAGGTCTTCACA 24787 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 24788 AAGATCTGCAT 24798 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | || || ||||| ||||||||||| ||||| || | || Sbjct 24815 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCATCT 24874 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| || || || || ||||||||||| || | || |||||||| Sbjct 24875 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 24934 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || ||| ||||| | | | || | ||| | | || || || | |||||||| Sbjct 24935 TGGAT-TTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGT 24993 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || || || ||||||||||| Sbjct 24994 CTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 25026 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||||||||| || | || |||| ||||||||| ||||| Sbjct 24380 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAG 24439 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || ||||||||||| || | || ||||| || ||||| ||| | | Sbjct 24440 ATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCTTGGATCTTGGCCTTCACGTTC 24499 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | | || || |||| ||||| ||||| || || || || || ||| Sbjct 24500 TCAATGGTGTCACTGGGCTCAACTTCCAAAGTGATTGTTTTTCCAGTTAGCGTCTTGACA 24559 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 24560 AAGATCTGCAT 24570 >seq12251 Length=2530766 Score = 107 bits (118), Expect = 1e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||||||||| || || || |||||||| ||||||||||| ||||| || | || Sbjct 1821557 CAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGACCATC 1821498 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||| ||||| || ||||| | || ||||||||| ||| | || || ||||| Sbjct 1821497 TTCCAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 1821438 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || ||| ||| | | | || | ||| | | ||||| || | ||||| || Sbjct 1821437 CTGGATTTTTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCGACCTCAAGGGTGATCGT 1821378 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| ||||| ||||| ||||||||||||||| Sbjct 1821377 CTTGCCAGTGAGGGTTTTGACAAAGATCTGCATC 1821344 >seq32410 Length=743546 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 |||||| || || || || |||||||| ||||||||||| |||| ||| | || Sbjct 172036 CAGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAATGTGCGGCCATC 171977 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||| ||||| || || || | || ||||||||| ||| | || || ||||| Sbjct 171976 TTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 171917 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 | |||| ||| | | | || | ||| | | || || || | |||||||| Sbjct 171916 CTGGACCTTTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGT 171857 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || ||||| ||||| ||||||||||||||| Sbjct 171856 CTTACCAGTGAGTGTTTTGACAAAGATCTGCATC 171823 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 |||||| || || || || |||||||| ||||||||||| ||||| ||| | || Sbjct 172264 CAGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGGCCATC 172205 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||| ||||| || || || | || ||||||||| ||| | || || ||||| Sbjct 172204 TTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 172145 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 | |||| ||| | | | || | ||| | | || || || | |||||||| Sbjct 172144 CTGGACCTTTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGT 172085 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || | || || || ||||||||||| Sbjct 172084 CTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 172052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322425578662880