Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq21577 131 1e-25 seq8150 118 9e-22 seq15552 111 1e-19 seq147642 107 2e-18 seq12251 96.9 3e-15 seq159452 86.0 6e-12 seq147862 82.4 7e-11 seq35953 82.4 7e-11 >seq21577 Length=2421781 Score = 131 bits (144), Expect = 1e-25 Identities = 171/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || || || ||||| ||||| ||||| || |||||| |||| ||||| || Sbjct 25258 AAAGATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCC 25199 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| | || | || ||| | ||| |||||||||||| | || || || Sbjct 25198 CAGCGACACCATTGAGAATGTGAAAGCTAAAATCCAAGACAAGGAAGGCATCCCTCCTGA 25139 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATT 31367 ||||||||||| || ||||||||||| ||||||||||| | | | || || |||| Sbjct 25138 TCAGCAGCGTCTGATCTTCGCTGGCAAGCAGTTGGAAGA-TGGACGCACGCTGTCTGATT 25080 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | ||||| || || ||||| || || ||||| || || | ||||| || |||| Sbjct 25079 ACAACATCCAGAAGGAATCCACCCTCCATCTTGTCCTGCGTCTGAGAGGTGGTA 25026 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| ||||| || |||||| | || ||||| || | Sbjct 24342 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 24283 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | ||| |||||||||||| | || || |||||| Sbjct 24282 GACACCATTGAGAACGTCAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 24223 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 |||||||| || ||||||||||| ||| |||| || | | | || || ||||| || Sbjct 24222 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGA-TGGACGCACGCTGTCTGATTACAA 24164 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || ||||| || || || ||||| || | ||||| || |||| Sbjct 24163 CATCCAGAAGGAATCCACCCTCCACCTGGTGCTCCGTCTGAGAGGTGGTA 24114 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || |||||| |||| ||||| || | Sbjct 25026 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 24967 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | ||| |||||||||||| | || || |||||| Sbjct 24966 GACACCATTGAGAACGTCAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 24907 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 |||||||| || || || ||||| ||| ||||||| | | | ||| || || || || Sbjct 24906 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGA-TGGACGCACTCTGTCTGACTACAA 24848 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || || || || || ||||| || | ||||| || |||| Sbjct 24847 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGTCTGAGAGGTGGTA 24798 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| |||| || ||||| ||||| | || || ||||| Sbjct 24798 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAAACCATCACTCTTGAGGTGGAACCAAGT 24739 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || || ||||||||| | || || |||||| Sbjct 24738 GACACCATTGAGAACGTCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCTCCTGACCAG 24679 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 |||||| | || ||||| ||||||||||||||||| | | | ||| || ||| || || Sbjct 24678 CAGCGTTTGATCTTCGCCGGCAAACAGTTGGAAGA-TGGACGCACTCTGTCCGACTACAA 24620 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || ||||| || || || ||||| || || | ||||| || |||| Sbjct 24619 CATCCAGAAAGAGTCCACACTCCATCTTGTCCTGCGTCTGAGAGGTGGTA 24570 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| |||| ||||| || |||||| | || ||||| || | Sbjct 24114 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 24055 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||||||||||||| | || || || ||| Sbjct 24054 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAG 23995 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 |||||||| || ||||||||||| ||| ||||||| | | | || || ||| || || Sbjct 23994 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGA-TGGACGCACGCTGTCCGACTACAA 23936 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || || ||||| || || Sbjct 23935 CATCCAGAAGGAGTCCACCCTGCATCTCGTCCT 23903 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || || ||||| ||||| | || ||||| || Sbjct 24570 ATGCAGATCTTTGTCAAGACGCTAACTGGAAAAACAATCACTTTGGAAGTTGAGCCCAGT 24511 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || || ||||||||| | || || |||||| Sbjct 24510 GACACCATTGAGAACGTGAAGGCCAAGATCCAAGATAAGGAAGGCATTCCTCCTGACCAG 24451 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 |||||||| || ||||||||||| ||| |||| || | | | || || ||| || || Sbjct 24450 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGA-TGGACGCACCCTGTCCGACTACAA 24392 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || || || || ||||| || || | ||||| || |||| Sbjct 24391 CATCCAGAAGGAGTCCACCCTCCATCTCGTCCTGCGTCTGAGAGGTGGTA 24342 >seq8150 Length=1005622 Score = 118 bits (130), Expect = 9e-22 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || || || ||||| ||||| ||||| || |||||| | || ||||| || Sbjct 148980 AAAGATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCC 148921 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| | || | || ||| | ||| |||||||||||| | || || || Sbjct 148920 CAGCGACACCATTGAGAATGTGAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGA 148861 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATT 31367 ||||||||||| || ||||||||||| ||| ||||||| | | | || || ||| | Sbjct 148860 TCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGA-TGGACGCACCCTGTCCGACT 148802 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | ||||| || || || || ||||| || ||||| || | || ||||| || Sbjct 148801 ACAACATCCAGAAGGAGTCCACTCTCCACCTGGTGCTCCGCCTTAGGGGAGG 148750 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/139 (74%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 31210 GACT-CTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGG 31268 |||| ||||| ||||| || ||| || |||| ||||| || ||||| | || | | Sbjct 148688 GACTGCTGACTGGCAAGACCATCCCCCTCGAGGTTGAGCCCAGCGACACCATTGAGAACG 148629 Query 31269 TCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCG 31328 |||| | || ||||||||||||| | || || |||||||||||||| || |||| Sbjct 148628 TCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTGATCTTCG 148569 Query 31329 CTGGCAAACAGTTGGAAGA 31347 |||| || ||| ||||||| Sbjct 148568 CTGGTAAGCAGCTGGAAGA 148550 >seq15552 Length=1137653 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 23063 GTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGG 23122 ||||||||||||||||| || || | || || || || || ||||||| || |||| Sbjct 1133832 GTGTACTCTACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGG 1133773 Query 23123 TTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGC 23182 |||||||| || ||||| | ||||||||| |||||||| || ||||| ||||| ||| Sbjct 1133772 TTGCTTTTGCGGTTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGCCGGTCTCTGTCTGA 1133713 Query 23183 GACTCGATGATCGC 23196 ||||| ||||| || Sbjct 1133712 GACTCAATGATGGC 1133699 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 23352 TCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTT 23411 |||| || ||||| || ||||| || ||||| ||||| || | || | | ||||||| Sbjct 1132501 TCATGAAGAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCTCTGTTCCTCTT 1132442 Query 23412 TGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGT 23471 | || ||||||||||| | || | ||||| || | ||| |||||| ||||| |||| Sbjct 1132441 TACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCAGGGCTCCAGGT 1132382 Query 23472 AAACGGCAAACGCGCCCGGTCTCT 23495 | | |||||| || || ||||||| Sbjct 1132381 ACATGGCAAAAGCTCCTGGTCTCT 1132358 Score = 86.0 bits (94), Expect = 6e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 23090 TTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTG 23149 || || || || || ||||||| || |||||||||||| || ||||| | ||||||| Sbjct 1133693 TTACTGCATTTAATGGTGCCCAGGTTCTGCTGGTTGCTTTTGCGGTTGCAGGCATCCTTG 1133634 Query 23150 TAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 || |||||||| || ||||| ||||| ||| ||||| ||||| || ||||| Sbjct 1133633 TAAAGCATGTAGGGTGTGCCGGTCTCTGTCTGAGACTCAATGATGGCATACCACA 1133579 >seq147642 Length=763 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 23063 GTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGG 23122 |||||||||||||| || || || | || || || || || ||||||| || |||| Sbjct 629 GTGTACTCTACAATCTCTGTGCACAAGTTACTGCATTTGATGGTGCCCAGGTTCTGCTGG 688 Query 23123 TTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGC 23182 ||||| || || ||||| | |||||||||||||||||| || ||||| ||||| ||| Sbjct 689 TTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGTAGGGTGTGCCGGTCTCTGTCTGA 748 Query 23183 GACTCGATGATCGC 23196 ||||| ||||| || Sbjct 749 GACTCAATGATGGC 762 >seq12251 Length=2530766 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || || || ||||| ||||||||| | || || || || | Sbjct 1821345 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACGATCACCCTTGAGGTCGAGCCAAGC 1821404 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | ||| |||||| |||||| | || || |||||| Sbjct 1821405 GACACCATTGAGAACGTCAAGGCAAAAATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 1821464 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || |||||||||||| ||||||| | || || || || ||| Sbjct 1821465 CAGAGGTTGATTTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTGACTACAAC 1821524 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || ||||| || || | |||||||| || | || ||||| ||| Sbjct 1821525 ATCCAGAAAGAGTCCACCTTGCATCTGGTGCTGCGTCTCAGGGGAGGT 1821572 >seq159452 Length=1242 Score = 86.0 bits (94), Expect = 6e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 22459 CACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAA 22518 ||| |||||||| || |||| || | |||| ||| |||||| ||| | || |||| Sbjct 145 CACCTGAAACTCTCCAGACAGAACTCTGCGTGTGTAGATGTTGCTAGTGTATGGCTCGAT 86 Query 22519 AGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAG 22578 || |||||||||||||| |||||||| || || || || ||||| || |||| ||| || Sbjct 85 TGACTCATTGTTTCCCAGGATCTGAGCAGTGGAGGCAGTGGGCATAGGAGCCAGCAGCAG 26 >seq147862 Length=769 Score = 82.4 bits (90), Expect = 7e-11 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 31294 AGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||| | |||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 63 AGGCATCCCGCCCGACCAGCAGCGTCTGATTTTCGCTGGCAAACAGTTGGAAGAC 9 >seq35953 Length=415359 Score = 82.4 bits (90), Expect = 7e-11 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 31294 AGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||| | |||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 352 AGGCATCCCGCCCGACCAGCAGCGTCTGATTTTCGCTGGCAAACAGTTGGAAGAC 298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444851614910160