Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq21577 131 1e-25
seq8150 118 9e-22
seq15552 111 1e-19
seq147642 107 2e-18
seq12251 96.9 3e-15
seq159452 86.0 6e-12
seq147862 82.4 7e-11
seq35953 82.4 7e-11
>seq21577
Length=2421781
Score = 131 bits (144), Expect = 1e-25
Identities = 171/234 (73%), Gaps = 2/234 (1%)
Strand=Plus/Minus
Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248
||| ||||| || || || ||||| ||||| ||||| || |||||| |||| ||||| ||
Sbjct 25258 AAAGATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCC 25199
Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308
||||| | || | || ||| | ||| |||||||||||| | || || ||
Sbjct 25198 CAGCGACACCATTGAGAATGTGAAAGCTAAAATCCAAGACAAGGAAGGCATCCCTCCTGA 25139
Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATT 31367
||||||||||| || ||||||||||| ||||||||||| | | | || || ||||
Sbjct 25138 TCAGCAGCGTCTGATCTTCGCTGGCAAGCAGTTGGAAGA-TGGACGCACGCTGTCTGATT 25080
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
| ||||| || || ||||| || || ||||| || || | ||||| || ||||
Sbjct 25079 ACAACATCCAGAAGGAATCCACCCTCCATCTTGTCCTGCGTCTGAGAGGTGGTA 25026
Score = 123 bits (136), Expect = 2e-23
Identities = 167/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || ||||| ||||| ||||| || |||||| | || ||||| || |
Sbjct 24342 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 24283
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | |||||| | ||| |||||||||||| | || || ||||||
Sbjct 24282 GACACCATTGAGAACGTCAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 24223
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371
|||||||| || ||||||||||| ||| |||| || | | | || || ||||| ||
Sbjct 24222 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGA-TGGACGCACGCTGTCTGATTACAA 24164
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||| || || ||||| || || || ||||| || | ||||| || ||||
Sbjct 24163 CATCCAGAAGGAATCCACCCTCCACCTGGTGCTCCGTCTGAGAGGTGGTA 24114
Score = 123 bits (136), Expect = 2e-23
Identities = 167/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| ||||| ||||| || |||||| |||| ||||| || |
Sbjct 25026 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 24967
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | |||||| | ||| |||||||||||| | || || ||||||
Sbjct 24966 GACACCATTGAGAACGTCAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 24907
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371
|||||||| || || || ||||| ||| ||||||| | | | ||| || || || ||
Sbjct 24906 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGA-TGGACGCACTCTGTCTGACTACAA 24848
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||| || || || || || || || ||||| || | ||||| || ||||
Sbjct 24847 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGTCTGAGAGGTGGTA 24798
Score = 105 bits (116), Expect = 6e-18
Identities = 163/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || ||||| |||| || ||||| ||||| | || || |||||
Sbjct 24798 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAAACCATCACTCTTGAGGTGGAACCAAGT 24739
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | ||||| | || || ||||||||| | || || ||||||
Sbjct 24738 GACACCATTGAGAACGTCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCTCCTGACCAG 24679
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371
|||||| | || ||||| ||||||||||||||||| | | | ||| || ||| || ||
Sbjct 24678 CAGCGTTTGATCTTCGCCGGCAAACAGTTGGAAGA-TGGACGCACTCTGTCCGACTACAA 24620
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||| || ||||| || || || ||||| || || | ||||| || ||||
Sbjct 24619 CATCCAGAAAGAGTCCACACTCCATCTTGTCCTGCGTCTGAGAGGTGGTA 24570
Score = 98.7 bits (108), Expect = 9e-16
Identities = 151/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || ||||| |||| ||||| || |||||| | || ||||| || |
Sbjct 24114 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 24055
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | || || | || ||||||||||||| | || || || |||
Sbjct 24054 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAG 23995
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371
|||||||| || ||||||||||| ||| ||||||| | | | || || ||| || ||
Sbjct 23994 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGA-TGGACGCACGCTGTCCGACTACAA 23936
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || || || || || || ||||| || ||
Sbjct 23935 CATCCAGAAGGAGTCCACCCTGCATCTCGTCCT 23903
Score = 87.8 bits (96), Expect = 2e-12
Identities = 159/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || ||||| || || || ||||| ||||| | || ||||| ||
Sbjct 24570 ATGCAGATCTTTGTCAAGACGCTAACTGGAAAAACAATCACTTTGGAAGTTGAGCCCAGT 24511
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | || || | || || ||||||||| | || || ||||||
Sbjct 24510 GACACCATTGAGAACGTGAAGGCCAAGATCCAAGATAAGGAAGGCATTCCTCCTGACCAG 24451
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371
|||||||| || ||||||||||| ||| |||| || | | | || || ||| || ||
Sbjct 24450 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGA-TGGACGCACCCTGTCCGACTACAA 24392
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||| || || || || || || ||||| || || | ||||| || ||||
Sbjct 24391 CATCCAGAAGGAGTCCACCCTCCATCTCGTCCTGCGTCTGAGAGGTGGTA 24342
>seq8150
Length=1005622
Score = 118 bits (130), Expect = 9e-22
Identities = 167/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248
||| ||||| || || || ||||| ||||| ||||| || |||||| | || ||||| ||
Sbjct 148980 AAAGATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCC 148921
Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308
||||| | || | || ||| | ||| |||||||||||| | || || ||
Sbjct 148920 CAGCGACACCATTGAGAATGTGAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGA 148861
Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATT 31367
||||||||||| || ||||||||||| ||| ||||||| | | | || || ||| |
Sbjct 148860 TCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGA-TGGACGCACCCTGTCCGACT 148802
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
| ||||| || || || || ||||| || ||||| || | || ||||| ||
Sbjct 148801 ACAACATCCAGAAGGAGTCCACTCTCCACCTGGTGCTCCGCCTTAGGGGAGG 148750
Score = 86.0 bits (94), Expect = 6e-12
Identities = 103/139 (74%), Gaps = 1/139 (1%)
Strand=Plus/Minus
Query 31210 GACT-CTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGG 31268
|||| ||||| ||||| || ||| || |||| ||||| || ||||| | || | |
Sbjct 148688 GACTGCTGACTGGCAAGACCATCCCCCTCGAGGTTGAGCCCAGCGACACCATTGAGAACG 148629
Query 31269 TCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCG 31328
|||| | || ||||||||||||| | || || |||||||||||||| || ||||
Sbjct 148628 TCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTGATCTTCG 148569
Query 31329 CTGGCAAACAGTTGGAAGA 31347
|||| || ||| |||||||
Sbjct 148568 CTGGTAAGCAGCTGGAAGA 148550
>seq15552
Length=1137653
Score = 111 bits (122), Expect = 1e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 23063 GTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGG 23122
||||||||||||||||| || || | || || || || || ||||||| || ||||
Sbjct 1133832 GTGTACTCTACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGG 1133773
Query 23123 TTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGC 23182
|||||||| || ||||| | ||||||||| |||||||| || ||||| ||||| |||
Sbjct 1133772 TTGCTTTTGCGGTTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGCCGGTCTCTGTCTGA 1133713
Query 23183 GACTCGATGATCGC 23196
||||| ||||| ||
Sbjct 1133712 GACTCAATGATGGC 1133699
Score = 93.3 bits (102), Expect = 4e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 23352 TCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTT 23411
|||| || ||||| || ||||| || ||||| ||||| || | || | | |||||||
Sbjct 1132501 TCATGAAGAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCTCTGTTCCTCTT 1132442
Query 23412 TGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGT 23471
| || ||||||||||| | || | ||||| || | ||| |||||| ||||| ||||
Sbjct 1132441 TACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCAGGGCTCCAGGT 1132382
Query 23472 AAACGGCAAACGCGCCCGGTCTCT 23495
| | |||||| || || |||||||
Sbjct 1132381 ACATGGCAAAAGCTCCTGGTCTCT 1132358
Score = 86.0 bits (94), Expect = 6e-12
Identities = 88/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 23090 TTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTG 23149
|| || || || || ||||||| || |||||||||||| || ||||| | |||||||
Sbjct 1133693 TTACTGCATTTAATGGTGCCCAGGTTCTGCTGGTTGCTTTTGCGGTTGCAGGCATCCTTG 1133634
Query 23150 TAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204
|| |||||||| || ||||| ||||| ||| ||||| ||||| || |||||
Sbjct 1133633 TAAAGCATGTAGGGTGTGCCGGTCTCTGTCTGAGACTCAATGATGGCATACCACA 1133579
>seq147642
Length=763
Score = 107 bits (118), Expect = 2e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 23063 GTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGG 23122
|||||||||||||| || || || | || || || || || ||||||| || ||||
Sbjct 629 GTGTACTCTACAATCTCTGTGCACAAGTTACTGCATTTGATGGTGCCCAGGTTCTGCTGG 688
Query 23123 TTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGC 23182
||||| || || ||||| | |||||||||||||||||| || ||||| ||||| |||
Sbjct 689 TTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGTAGGGTGTGCCGGTCTCTGTCTGA 748
Query 23183 GACTCGATGATCGC 23196
||||| ||||| ||
Sbjct 749 GACTCAATGATGGC 762
>seq12251
Length=2530766
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || || || || || ||||| ||||||||| | || || || || |
Sbjct 1821345 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACGATCACCCTTGAGGTCGAGCCAAGC 1821404
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | ||||| | ||| |||||| |||||| | || || ||||||
Sbjct 1821405 GACACCATTGAGAACGTCAAGGCAAAAATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 1821464
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | | || || |||||||||||| ||||||| | || || || || |||
Sbjct 1821465 CAGAGGTTGATTTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTGACTACAAC 1821524
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
|| || ||||| || || | |||||||| || | || ||||| |||
Sbjct 1821525 ATCCAGAAAGAGTCCACCTTGCATCTGGTGCTGCGTCTCAGGGGAGGT 1821572
>seq159452
Length=1242
Score = 86.0 bits (94), Expect = 6e-12
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 22459 CACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAA 22518
||| |||||||| || |||| || | |||| ||| |||||| ||| | || ||||
Sbjct 145 CACCTGAAACTCTCCAGACAGAACTCTGCGTGTGTAGATGTTGCTAGTGTATGGCTCGAT 86
Query 22519 AGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAG 22578
|| |||||||||||||| |||||||| || || || || ||||| || |||| ||| ||
Sbjct 85 TGACTCATTGTTTCCCAGGATCTGAGCAGTGGAGGCAGTGGGCATAGGAGCCAGCAGCAG 26
>seq147862
Length=769
Score = 82.4 bits (90), Expect = 7e-11
Identities = 51/55 (93%), Gaps = 0/55 (0%)
Strand=Plus/Minus
Query 31294 AGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348
|||| | |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 63 AGGCATCCCGCCCGACCAGCAGCGTCTGATTTTCGCTGGCAAACAGTTGGAAGAC 9
>seq35953
Length=415359
Score = 82.4 bits (90), Expect = 7e-11
Identities = 51/55 (93%), Gaps = 0/55 (0%)
Strand=Plus/Minus
Query 31294 AGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348
|||| | |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 352 AGGCATCCCGCCCGACCAGCAGCGTCTGATTTTCGCTGGCAAACAGTTGGAAGAC 298
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 444851614910160
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