Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq19765 89.7 1e-12 seq34520 84.2 4e-11 >seq19765 Length=1114994 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || || |||||||| || ||||||||||||||| ||| | || || || ||||||||| Sbjct 414354 GTGGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTTTGGGTCTTTTGCTTCTATTTTCTGG 414413 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 | ||||| || || | ||||||| ||||||| ||||||||| Sbjct 414414 TTAAAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGA 414457 >seq34520 Length=2775569 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || || |||||||| || ||||||||||||||| || | || || || ||||||||| Sbjct 505223 GTGGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTTGGGGTCTTTTGCTTCTATTTTCTGG 505282 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 | ||||| || || | ||||||| ||||||| ||||||||| Sbjct 505283 CTAAAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGA 505326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 987502443145215