Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq36865 113 4e-20
seq3015 107 2e-18
seq15552 86.0 6e-12
>seq36865
Length=2971667
Score = 113 bits (124), Expect = 4e-20
Identities = 109/139 (78%), Gaps = 1/139 (1%)
Strand=Plus/Minus
Query 11649 AACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtt 11708
||||| | ||||| || || |||||||| || | || | ||||||||||| |||| ||
Sbjct 1669567 AACCT-CATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTT 1669509
Query 11709 tttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAA 11768
| || | ||| | || ||||||||||| ||||| ||||| || || ||||| |||||||
Sbjct 1669508 TCTTCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAA 1669449
Query 11769 ATGCTACTACTCTTTCTCC 11787
||||||||| || |||||
Sbjct 1669448 ATGCTACTAATCGCTCTCC 1669430
>seq3015
Length=1951583
Score = 107 bits (118), Expect = 2e-18
Identities = 102/129 (79%), Gaps = 1/129 (1%)
Strand=Plus/Plus
Query 11649 AACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtt 11708
||||| | ||||| || || |||||||| || | || | ||||||||||| |||| ||
Sbjct 197197 AACCT-CATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTT 197255
Query 11709 tttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAA 11768
| || | ||| | || ||||||||||| ||||| ||||| || || ||||| |||||||
Sbjct 197256 TCTTCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAA 197315
Query 11769 ATGCTACTA 11777
|||||||||
Sbjct 197316 ATGCTACTA 197324
>seq15552
Length=1137653
Score = 86.0 bits (94), Expect = 6e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197
|||||||| |||||||| | ||||| | ||| || || ||||||||||| || || ||
Sbjct 1136613 ACCTGAAACTCTCCAGACAGAACTCTGCGTGTGTAGATGTTGCTAGTATACGGCTCGATT 1136554
Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257
|||||||| || | | || |||| || || ||||| ||||| || || | || ||
Sbjct 1136553 GACTCATTGTTGCCCAGGATCTGAGCAGTGGAGGCAGTGGGCATGGGAGCCAGCAGCAGA 1136494
Query 37258 CTATTTCTCAATCCATG 37274
|| || | || ||||||
Sbjct 1136493 CTGTTACGCACTCCATG 1136477
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 467563310975120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |