Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq36865 113 4e-20 seq3015 107 2e-18 seq15552 86.0 6e-12 >seq36865 Length=2971667 Score = 113 bits (124), Expect = 4e-20 Identities = 109/139 (78%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 11649 AACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtt 11708 ||||| | ||||| || || |||||||| || | || | ||||||||||| |||| || Sbjct 1669567 AACCT-CATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTT 1669509 Query 11709 tttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAA 11768 | || | ||| | || ||||||||||| ||||| ||||| || || ||||| ||||||| Sbjct 1669508 TCTTCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAA 1669449 Query 11769 ATGCTACTACTCTTTCTCC 11787 ||||||||| || ||||| Sbjct 1669448 ATGCTACTAATCGCTCTCC 1669430 >seq3015 Length=1951583 Score = 107 bits (118), Expect = 2e-18 Identities = 102/129 (79%), Gaps = 1/129 (1%) Strand=Plus/Plus Query 11649 AACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtt 11708 ||||| | ||||| || || |||||||| || | || | ||||||||||| |||| || Sbjct 197197 AACCT-CATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTT 197255 Query 11709 tttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAA 11768 | || | ||| | || ||||||||||| ||||| ||||| || || ||||| ||||||| Sbjct 197256 TCTTCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAA 197315 Query 11769 ATGCTACTA 11777 ||||||||| Sbjct 197316 ATGCTACTA 197324 >seq15552 Length=1137653 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| |||||||| | ||||| | ||| || || ||||||||||| || || || Sbjct 1136613 ACCTGAAACTCTCCAGACAGAACTCTGCGTGTGTAGATGTTGCTAGTATACGGCTCGATT 1136554 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 |||||||| || | | || |||| || || ||||| ||||| || || | || || Sbjct 1136553 GACTCATTGTTGCCCAGGATCTGAGCAGTGGAGGCAGTGGGCATGGGAGCCAGCAGCAGA 1136494 Query 37258 CTATTTCTCAATCCATG 37274 || || | || |||||| Sbjct 1136493 CTGTTACGCACTCCATG 1136477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467563310975120