Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq15552 118 1e-21
seq44218 113 6e-20
seq14570 113 6e-20
seq159452 105 9e-18
seq36865 102 1e-16
seq3015 96.9 5e-15
seq19765 84.2 3e-11
>seq15552
Length=1137653
Score = 118 bits (130), Expect = 1e-21
Identities = 116/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115
|| |||||| ||||| ||||||||||| ||||| || || ||| | |||||| | |||
Sbjct 1132512 CTCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCT 1132453
Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175
|||||||| || || || ||||||||||| || ||||| | | ||| ||| |||||||
Sbjct 1132452 CTGTTCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCA 1132393
Query 66176 CGGTTCCAAGTATATGGCCATAACTCCAGG 66205
|| |||| ||| ||||| | | |||| ||
Sbjct 1132392 GGGCTCCAGGTACATGGCAAAAGCTCCTGG 1132363
Score = 102 bits (112), Expect = 1e-16
Identities = 124/169 (73%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965
|||| || || || ||||| || || |||||| ||| | || || || || ||||| |
Sbjct 1137076 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCAATGTGGATGT 1137017
Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025
| | || || || || || ||||||||||| |||||||||||||| |||| ||| ||||
Sbjct 1137016 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 1136957
Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 65074
|||| | || ||||| | || ||||| | | ||| | || |||||
Sbjct 1136956 TTTGCGAGATCTCCCACACGGTCTTATACAGTTCCTTCAGGTCATCTGG 1136908
>seq44218
Length=785574
Score = 113 bits (124), Expect = 6e-20
Identities = 115/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115
|| |||||| ||||| ||||||||||| ||||| || || ||| | |||||| | ||
Sbjct 784487 CTCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCATAAAACAGATCTCTAGCTCG 784546
Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175
|||||||| || || |||||||||||||| || ||||| | | ||| ||| |||||||
Sbjct 784547 CTGTTCCTCTTTACCAGTATTCTTTTTAAGCTCTAGGAAGTCAAAAATGTCAAAATGCCA 784606
Query 66176 CGGTTCCAAGTATATGGCCATAACTCCAGG 66205
|| |||| ||| || || | | |||| ||
Sbjct 784607 GGGCTCCAGGTACATAGCAAAAGCTCCTGG 784636
>seq14570
Length=4705
Score = 113 bits (124), Expect = 6e-20
Identities = 115/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115
|| |||||| ||||| ||||||||||| ||||| || || ||| | |||||| | ||
Sbjct 621 CTCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCATAAAACAGATCTCTAGCTCG 680
Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175
|||||||| || || |||||||||||||| || ||||| | | ||| ||| |||||||
Sbjct 681 CTGTTCCTCTTTACCAGTATTCTTTTTAAGCTCTAGGAAGTCAAAAATGTCAAAATGCCA 740
Query 66176 CGGTTCCAAGTATATGGCCATAACTCCAGG 66205
|| |||| ||| || || | | |||| ||
Sbjct 741 GGGCTCCAGGTACATAGCAAAAGCTCCTGG 770
>seq159452
Length=1242
Score = 105 bits (116), Expect = 9e-18
Identities = 127/170 (75%), Gaps = 2/170 (1%)
Strand=Plus/Minus
Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965
|||| || || || ||||| || || |||||| ||| | || || || || ||||| |
Sbjct 578 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCGATGTGGATGT 519
Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025
| | || || || || || ||||||||||| |||||||||||||| |||| ||| ||||
Sbjct 518 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 459
Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 65074
|||| | || ||||| | ||| ||||| | ||| ||| | || |||||
Sbjct 458 TTTGAGAGATCTCCCACACAGTCTTATACAGCTC-CTTCAGGTCATCTGG 410
>seq36865
Length=2971667
Score = 102 bits (112), Expect = 1e-16
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| ||||| || || | ||| ||||| | |||||||||||||| ||||| | || |
Sbjct 1669565 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 1669506
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| | ||| | |||| |||||||||||||| ||||| || ||||| ||||| ||||| |
Sbjct 1669505 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 1669446
Query 36300 CAATAAGTCTCTCTCC 36315
| | | || ||||||
Sbjct 1669445 CTACTAATCGCTCTCC 1669430
Score = 87.8 bits (96), Expect = 2e-12
Identities = 81/103 (79%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 36650 ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 36709
|||| ||| || || |||||||| ||||| |||| || | ||| ||||| |||||||||
Sbjct 1665715 ATATTCACCTCCTCAACTGTCCAGAATGAAGCCTGAGCTTGTTTGTACATTTTCCAGATG 1665656
Query 36710 TCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATTTT 36752
||| ||| ||||| || ||||| ||||||| ||| | ||||
Sbjct 1665655 TCAGAATACTGAATAGGGAAAATGACAAATCGCTTTGGGTTTT 1665613
>seq3015
Length=1951583
Score = 96.9 bits (106), Expect = 5e-15
Identities = 94/121 (78%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| ||||| || || | ||| ||||| | |||||||||||||| ||||| | || |
Sbjct 197199 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 197258
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| | ||| | |||| |||||||||||||| ||||| || ||||| ||||| ||||| |
Sbjct 197259 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 197318
Query 36300 C 36300
|
Sbjct 197319 C 197319
Score = 91.5 bits (100), Expect = 2e-13
Identities = 82/103 (80%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 36650 ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 36709
|||| ||| || || |||||||| ||||| |||| || | ||| ||||| |||||||||
Sbjct 198212 ATATTCACCTCCTCAACTGTCCAGAATGAAGCCTGAGCTTGTTTGTACATTTTCCAGATG 198271
Query 36710 TCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATTTT 36752
||| ||| ||||| |||||||| ||||||| ||| | ||||
Sbjct 198272 TCAGAATACTGAATAGGAAAAATGACAAATCGCTTTGGGTTTT 198314
>seq19765
Length=1114994
Score = 84.2 bits (92), Expect = 3e-11
Identities = 61/71 (86%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 36668 GTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGA 36727
||||| || || ||||||||||| || ||||| | |||||||||||| || |||||||||
Sbjct 413419 GTCCAGAAGGAGGCCTCTGCCTTCTTGTACATCTGCCAGATGTCATGGTACTGAATTGGA 413360
Query 36728 AAAATAACAAA 36738
||||| |||||
Sbjct 413359 AAAATGACAAA 413349
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 656822122461320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |