Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq32410 114 1e-20
seq12251 113 4e-20
>seq32410
Length=743546
Score = 114 bits (126), Expect = 1e-20
Identities = 155/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608
|||||| || | || | || |||||||| || ||||| || || || |||||
Sbjct 172495 ACGCAACACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAATGTGCGGCC 172436
Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668
||||| |||||||| || ||| |||||| | ||||| || || || |||||||||||
Sbjct 172435 ATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTT 172376
Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728
||| ||| || || | | || | ||||||| | ||||| ||||||| ||| |
Sbjct 172375 GTCCTGGATCTTAGCCTTGACGTTCTCAATTGTGTCGCTTGGCTCAACCTCAAGGGTGAT 172316
Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||||||| ||||| || || ||||| || |||||
Sbjct 172315 GGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 172280
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| |||||||| || ||||| || || || ||||| ||||| |||||||| ||
Sbjct 172248 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGGCCATCTTCCAGCTGTTTGCCG 172189
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| |||||| | ||||| || || || |||||||||||||| || ||| ||
Sbjct 172188 GCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGACCTTTGCCTTG 172129
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | |||||| | ||||| ||||||| ||| | |||||||| ||||| ||
Sbjct 172128 ACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTGCCTGTCAAGGTC 172069
Query 139748 TTTACGAATATTTGCAT 139764
|| ||||| || |||||
Sbjct 172068 TTGACGAAGATCTGCAT 172052
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| |||||||| || ||||| || || || ||||| ||||| |||||||| ||
Sbjct 172020 GTGGACTCTTTCTGGATGTTGTAGTCAGACAATGTGCGGCCATCTTCCAGCTGTTTGCCG 171961
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| |||||| | ||||| || || || |||||||||||||| || ||| ||
Sbjct 171960 GCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGACCTTTGCCTTG 171901
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | |||||| | ||||| ||||||| ||| | ||||| || || | |||
Sbjct 171900 ACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTACCAGTGAGTGTT 171841
Query 139748 TTTACGAATATTTGCAT 139764
|| || || || |||||
Sbjct 171840 TTGACAAAGATCTGCAT 171824
>seq12251
Length=2530766
Score = 113 bits (124), Expect = 4e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| |||||||| || ||||| || || || ||||| ||||| |||||||| |||
Sbjct 1821541 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGACCATCTTCCAGCTGTTTGCCA 1821482
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| | |||| | ||||| || || || |||||||||||||| ||||||| ||
Sbjct 1821481 GCAAAAATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATTTTTGCCTTG 1821422
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | |||||| | ||||| ||||||| ||| | ||||||||| || | |||
Sbjct 1821421 ACGTTCTCAATGGTGTCGCTTGGCTCGACCTCAAGGGTGATCGTCTTGCCAGTGAGGGTT 1821362
Query 139748 TTTACGAATATTTGCAT 139764
|| || || || |||||
Sbjct 1821361 TTGACAAAGATCTGCAT 1821345
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495045996061600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |