Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq15552 118 2e-21
seq44218 114 2e-20
seq34520 114 2e-20
seq19765 114 2e-20
seq14570 114 2e-20
seq159452 111 2e-19
seq36865 111 2e-19
seq3015 102 1e-16
>seq15552
Length=1137653
Score = 118 bits (130), Expect = 2e-21
Identities = 115/148 (78%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998
||||| ||||| ||||||||||| ||||| || || ||| |||||||| | ||| ||
Sbjct 1132508 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCTCTGT 1132449
Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058
||||| || || || ||||||||||| || ||||| | | ||| ||| ||||||| ||
Sbjct 1132448 TCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCAGGGC 1132389
Query 80059 TCCAAGTATATGGCCATAACTCCCGGTC 80086
|||| ||| ||||| | | |||| ||||
Sbjct 1132388 TCCAGGTACATGGCAAAAGCTCCTGGTC 1132361
Score = 107 bits (118), Expect = 3e-18
Identities = 125/169 (74%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844
|||| || ||||| ||||| || || |||||| ||| | || || || || ||||| |
Sbjct 1137076 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCAATGTGGATGT 1137017
Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904
| | || || || || || ||||||||||| |||||||||||||| |||| ||| ||||
Sbjct 1137016 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 1136957
Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 78953
|||| | || ||||| | || ||||| | | ||| | || |||||
Sbjct 1136956 TTTGCGAGATCTCCCACACGGTCTTATACAGTTCCTTCAGGTCATCTGG 1136908
>seq44218
Length=785574
Score = 114 bits (126), Expect = 2e-20
Identities = 114/148 (77%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998
||||| ||||| ||||||||||| ||||| || || ||| |||||||| | || ||
Sbjct 784491 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCATAAAACAGATCTCTAGCTCGCTGT 784550
Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058
||||| || || |||||||||||||| || ||||| | | ||| ||| ||||||| ||
Sbjct 784551 TCCTCTTTACCAGTATTCTTTTTAAGCTCTAGGAAGTCAAAAATGTCAAAATGCCAGGGC 784610
Query 80059 TCCAAGTATATGGCCATAACTCCCGGTC 80086
|||| ||| || || | | |||| ||||
Sbjct 784611 TCCAGGTACATAGCAAAAGCTCCTGGTC 784638
>seq34520
Length=2775569
Score = 114 bits (126), Expect = 2e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||| ||||| || || ||||| ||||| || |||||||| ||||| || || | ||| |
Sbjct 505346 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 505287
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| ||||| || || || ||||| ||||| |||||||||||||||| || || ||||| |
Sbjct 505286 TTAGCCAGAAAATAGAAGCAAAAGACCCCAAAAAGAAGATTCCTTCCACAGCAGCAAAAG 505227
Query 50102 CAACAAGTCTCTCTCC 50117
| || | |||||| ||
Sbjct 505226 CCACCACTCTCTCCCC 505211
>seq19765
Length=1114994
Score = 114 bits (126), Expect = 2e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||| ||||| || || ||||| ||||| || |||||||| ||||| || || | ||| |
Sbjct 414477 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 414418
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| | ||| || || || ||||| |||||| |||||||||||||||| || || ||||| |
Sbjct 414417 TTAACCAGAAAATAGAAGCAAAAGACCCAAAAAAGAAGATTCCTTCCACAGCAGCAAAAG 414358
Query 50102 CAACAAGTCTCTCTCC 50117
| || | |||||| ||
Sbjct 414357 CCACCACTCTCTCCCC 414342
>seq14570
Length=4705
Score = 114 bits (126), Expect = 2e-20
Identities = 114/148 (77%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998
||||| ||||| ||||||||||| ||||| || || ||| |||||||| | || ||
Sbjct 625 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCATAAAACAGATCTCTAGCTCGCTGT 684
Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058
||||| || || |||||||||||||| || ||||| | | ||| ||| ||||||| ||
Sbjct 685 TCCTCTTTACCAGTATTCTTTTTAAGCTCTAGGAAGTCAAAAATGTCAAAATGCCAGGGC 744
Query 80059 TCCAAGTATATGGCCATAACTCCCGGTC 80086
|||| ||| || || | | |||| ||||
Sbjct 745 TCCAGGTACATAGCAAAAGCTCCTGGTC 772
>seq159452
Length=1242
Score = 111 bits (122), Expect = 2e-19
Identities = 128/170 (75%), Gaps = 2/170 (1%)
Strand=Plus/Minus
Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844
|||| || ||||| ||||| || || |||||| ||| | || || || || ||||| |
Sbjct 578 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCGATGTGGATGT 519
Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904
| | || || || || || ||||||||||| |||||||||||||| |||| ||| ||||
Sbjct 518 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 459
Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 78953
|||| | || ||||| | ||| ||||| | ||| ||| | || |||||
Sbjct 458 TTTGAGAGATCTCCCACACAGTCTTATACAGCTC-CTTCAGGTCATCTGG 410
>seq36865
Length=2971667
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||| ||||| || || ||||| ||||| | |||||||||||||| ||||| | || |
Sbjct 1669565 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 1669506
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| | ||| | |||| |||||||| ||||| |||||||| ||||| ||||| ||||| |
Sbjct 1669505 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 1669446
Query 50102 CAACAAGTCTCTCTCC 50117
| || | || ||||||
Sbjct 1669445 CTACTAATCGCTCTCC 1669430
Score = 86.0 bits (94), Expect = 9e-12
Identities = 80/102 (78%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 50452 ATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 50511
|||| || || || |||||||| ||||| |||| || | ||| ||||| |||||||||
Sbjct 1665715 ATATTCACCTCCTCAACTGTCCAGAATGAAGCCTGAGCTTGTTTGTACATTTTCCAGATG 1665656
Query 50512 TCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553
||| ||| || || |||||||| ||||||| ||||| |||
Sbjct 1665655 TCAGAATACTGAATAGGGAAAATGACAAATCGCTTTGGGTTT 1665614
>seq3015
Length=1951583
Score = 102 bits (112), Expect = 1e-16
Identities = 97/124 (78%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||| ||||| || || ||||| ||||| | |||||||||||||| ||||| | || |
Sbjct 197199 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 197258
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| | ||| | |||| |||||||| ||||| |||||||| ||||| ||||| ||||| |
Sbjct 197259 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 197318
Query 50102 CAAC 50105
| ||
Sbjct 197319 CTAC 197322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716794795703720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |