Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq15552 118 2e-21 seq44218 114 2e-20 seq34520 114 2e-20 seq19765 114 2e-20 seq14570 114 2e-20 seq159452 111 2e-19 seq36865 111 2e-19 seq3015 102 1e-16 >seq15552 Length=1137653 Score = 118 bits (130), Expect = 2e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||| ||||| ||||||||||| ||||| || || ||| |||||||| | ||| || Sbjct 1132508 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCTCTGT 1132449 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 ||||| || || || ||||||||||| || ||||| | | ||| ||| ||||||| || Sbjct 1132448 TCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCAGGGC 1132389 Query 80059 TCCAAGTATATGGCCATAACTCCCGGTC 80086 |||| ||| ||||| | | |||| |||| Sbjct 1132388 TCCAGGTACATGGCAAAAGCTCCTGGTC 1132361 Score = 107 bits (118), Expect = 3e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| || ||||| ||||| || || |||||| ||| | || || || || ||||| | Sbjct 1137076 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCAATGTGGATGT 1137017 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | || || || || || ||||||||||| |||||||||||||| |||| ||| |||| Sbjct 1137016 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 1136957 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 78953 |||| | || ||||| | || ||||| | | ||| | || ||||| Sbjct 1136956 TTTGCGAGATCTCCCACACGGTCTTATACAGTTCCTTCAGGTCATCTGG 1136908 >seq44218 Length=785574 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||| ||||| ||||||||||| ||||| || || ||| |||||||| | || || Sbjct 784491 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCATAAAACAGATCTCTAGCTCGCTGT 784550 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 ||||| || || |||||||||||||| || ||||| | | ||| ||| ||||||| || Sbjct 784551 TCCTCTTTACCAGTATTCTTTTTAAGCTCTAGGAAGTCAAAAATGTCAAAATGCCAGGGC 784610 Query 80059 TCCAAGTATATGGCCATAACTCCCGGTC 80086 |||| ||| || || | | |||| |||| Sbjct 784611 TCCAGGTACATAGCAAAAGCTCCTGGTC 784638 >seq34520 Length=2775569 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || ||||| ||||| || |||||||| ||||| || || | ||| | Sbjct 505346 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 505287 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || || || ||||| ||||| |||||||||||||||| || || ||||| | Sbjct 505286 TTAGCCAGAAAATAGAAGCAAAAGACCCCAAAAAGAAGATTCCTTCCACAGCAGCAAAAG 505227 Query 50102 CAACAAGTCTCTCTCC 50117 | || | |||||| || Sbjct 505226 CCACCACTCTCTCCCC 505211 >seq19765 Length=1114994 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || ||||| ||||| || |||||||| ||||| || || | ||| | Sbjct 414477 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 414418 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||| || || || ||||| |||||| |||||||||||||||| || || ||||| | Sbjct 414417 TTAACCAGAAAATAGAAGCAAAAGACCCAAAAAAGAAGATTCCTTCCACAGCAGCAAAAG 414358 Query 50102 CAACAAGTCTCTCTCC 50117 | || | |||||| || Sbjct 414357 CCACCACTCTCTCCCC 414342 >seq14570 Length=4705 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||| ||||| ||||||||||| ||||| || || ||| |||||||| | || || Sbjct 625 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCATAAAACAGATCTCTAGCTCGCTGT 684 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 ||||| || || |||||||||||||| || ||||| | | ||| ||| ||||||| || Sbjct 685 TCCTCTTTACCAGTATTCTTTTTAAGCTCTAGGAAGTCAAAAATGTCAAAATGCCAGGGC 744 Query 80059 TCCAAGTATATGGCCATAACTCCCGGTC 80086 |||| ||| || || | | |||| |||| Sbjct 745 TCCAGGTACATAGCAAAAGCTCCTGGTC 772 >seq159452 Length=1242 Score = 111 bits (122), Expect = 2e-19 Identities = 128/170 (75%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| || ||||| ||||| || || |||||| ||| | || || || || ||||| | Sbjct 578 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCGATGTGGATGT 519 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | || || || || || ||||||||||| |||||||||||||| |||| ||| |||| Sbjct 518 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 459 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 78953 |||| | || ||||| | ||| ||||| | ||| ||| | || ||||| Sbjct 458 TTTGAGAGATCTCCCACACAGTCTTATACAGCTC-CTTCAGGTCATCTGG 410 >seq36865 Length=2971667 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || ||||| ||||| | |||||||||||||| ||||| | || | Sbjct 1669565 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 1669506 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||| | |||| |||||||| ||||| |||||||| ||||| ||||| ||||| | Sbjct 1669505 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 1669446 Query 50102 CAACAAGTCTCTCTCC 50117 | || | || |||||| Sbjct 1669445 CTACTAATCGCTCTCC 1669430 Score = 86.0 bits (94), Expect = 9e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 50452 ATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 50511 |||| || || || |||||||| ||||| |||| || | ||| ||||| ||||||||| Sbjct 1665715 ATATTCACCTCCTCAACTGTCCAGAATGAAGCCTGAGCTTGTTTGTACATTTTCCAGATG 1665656 Query 50512 TCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 ||| ||| || || |||||||| ||||||| ||||| ||| Sbjct 1665655 TCAGAATACTGAATAGGGAAAATGACAAATCGCTTTGGGTTT 1665614 >seq3015 Length=1951583 Score = 102 bits (112), Expect = 1e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || ||||| ||||| | |||||||||||||| ||||| | || | Sbjct 197199 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 197258 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||| | |||| |||||||| ||||| |||||||| ||||| ||||| ||||| | Sbjct 197259 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 197318 Query 50102 CAAC 50105 | || Sbjct 197319 CTAC 197322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716794795703720