Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq36865 107 2e-18 seq3015 96.9 3e-15 seq34520 86.0 6e-12 seq19765 82.4 7e-11 >seq36865 Length=2971667 Score = 107 bits (118), Expect = 2e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| || || ||||| || || | || | ||| ||||||| |||| ||| | Sbjct 1669565 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 1669506 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | ||||| | || ||||||||||| || || ||||| || || || ||||| ||||| | Sbjct 1669505 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 1669446 Query 14014 CTATTAATCGTTCTCCAAA 14032 ||| |||||| ||||| || Sbjct 1669445 CTACTAATCGCTCTCCTAA 1669427 >seq3015 Length=1951583 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| || || ||||| || || | || | ||| ||||||| |||| ||| | Sbjct 197199 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 197258 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | ||||| | || ||||||||||| || || ||||| || || || ||||| ||||| | Sbjct 197259 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 197318 Query 14014 CTATTAAT 14021 ||| |||| Sbjct 197319 CTACTAAT 197326 >seq34520 Length=2775569 Score = 86.0 bits (94), Expect = 6e-12 Identities = 84/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 14142 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14201 ||||| || ||||| | | || |||||||||||||| ||||||||||| || ||||| Sbjct 504769 ATGTAGGTGTCAATCAACAGACTGTACATTTCAGAGTGGATGTTTTCCATGGCAATCTGG 504710 Query 14202 AAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCC-GAGTAAA 14247 ||||| || ||||| | ||||| | | ||| |||||| ||||||| Sbjct 504709 AAACCGTAGAAGCAGCGGGCTTCAGTCACTTGGACTTCCTGAGTAAA 504663 >seq19765 Length=1114994 Score = 82.4 bits (90), Expect = 7e-11 Identities = 83/107 (78%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 14142 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14201 ||||| || ||||| | | || |||||||||||||| ||||||||||| || ||||| Sbjct 413907 ATGTAGGTGTCAATCAACAGACTGTACATTTCAGAGTGGATGTTTTCCATTGCAATCTGG 413848 Query 14202 AAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCC-GAGTAAA 14247 ||||| || ||||| | ||||| | | ||| || ||| ||||||| Sbjct 413847 AAACCGTAGAAGCAACGGGCTTCGGTCACTTGGACCTCCTGAGTAAA 413801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478743520188200