Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq36865 107 2e-18
seq3015 96.9 3e-15
seq34520 86.0 6e-12
seq19765 82.4 7e-11
>seq36865
Length=2971667
Score = 107 bits (118), Expect = 2e-18
Identities = 107/139 (77%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953
|||||||||| || || ||||| || || | || | ||| ||||||| |||| ||| |
Sbjct 1669565 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 1669506
Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013
| ||||| | || ||||||||||| || || ||||| || || || ||||| ||||| |
Sbjct 1669505 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 1669446
Query 14014 CTATTAATCGTTCTCCAAA 14032
||| |||||| ||||| ||
Sbjct 1669445 CTACTAATCGCTCTCCTAA 1669427
>seq3015
Length=1951583
Score = 96.9 bits (106), Expect = 3e-15
Identities = 98/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953
|||||||||| || || ||||| || || | || | ||| ||||||| |||| ||| |
Sbjct 197199 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 197258
Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013
| ||||| | || ||||||||||| || || ||||| || || || ||||| ||||| |
Sbjct 197259 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 197318
Query 14014 CTATTAAT 14021
||| ||||
Sbjct 197319 CTACTAAT 197326
>seq34520
Length=2775569
Score = 86.0 bits (94), Expect = 6e-12
Identities = 84/107 (79%), Gaps = 1/107 (1%)
Strand=Plus/Minus
Query 14142 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14201
||||| || ||||| | | || |||||||||||||| ||||||||||| || |||||
Sbjct 504769 ATGTAGGTGTCAATCAACAGACTGTACATTTCAGAGTGGATGTTTTCCATGGCAATCTGG 504710
Query 14202 AAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCC-GAGTAAA 14247
||||| || ||||| | ||||| | | ||| |||||| |||||||
Sbjct 504709 AAACCGTAGAAGCAGCGGGCTTCAGTCACTTGGACTTCCTGAGTAAA 504663
>seq19765
Length=1114994
Score = 82.4 bits (90), Expect = 7e-11
Identities = 83/107 (78%), Gaps = 1/107 (1%)
Strand=Plus/Minus
Query 14142 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14201
||||| || ||||| | | || |||||||||||||| ||||||||||| || |||||
Sbjct 413907 ATGTAGGTGTCAATCAACAGACTGTACATTTCAGAGTGGATGTTTTCCATTGCAATCTGG 413848
Query 14202 AAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCC-GAGTAAA 14247
||||| || ||||| | ||||| | | ||| || ||| |||||||
Sbjct 413847 AAACCGTAGAAGCAACGGGCTTCGGTCACTTGGACCTCCTGAGTAAA 413801
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478743520188200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |