Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq32410 86.0 5e-12
seq12251 86.0 5e-12
>seq32410
Length=743546
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957
||||||| ||| | ||| ||| || || | ||||| || |||||||| || | ||
Sbjct 172491 AACACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAATGTGCGGCCATCT 172432
Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017
|||| |||||||||||||| ||||| | ||| || || | || | |||||||| ||
Sbjct 172431 TCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCC 172372
Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077
|||| | ||||| | ||| |||||||| | ||| || || | || || ||
Sbjct 172371 TGGATCTTAGCCTTGACGTTCTCAATTGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTC 172312
Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| || || | || || || || || |||||
Sbjct 172311 TTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 172280
Score = 82.4 bits (90), Expect = 6e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941
|||||| | || | | ||| | ||| | ||| ||| || || | ||||| || ||
Sbjct 172051 GCCTCCCCTGAGACGCAGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGA 171992
Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001
|||||| || | || |||| |||||||||||||| ||||| | ||| || || | ||
Sbjct 171991 CAATGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGG 171932
Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061
| |||||||| || || | | ||||| | ||| ||||||| | ||| ||
Sbjct 171931 AATGCCTTCTTTGTCCTGGACCTTTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAAC 171872
Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| | || || || || || || || ||||| ||||| || |||||
Sbjct 171871 CTCAAGGGTGATGGTCTTACCAGTGAGTGTTTTGACAAAGATCTGCAT 171824
>seq12251
Length=2530766
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959
||||| ||| | ||| ||| || || | ||||| || |||| ||| || | || ||
Sbjct 1821554 CACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGACCATCTTC 1821495
Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019
|| |||||||| ||||||||||| | ||| || || | || | |||||||| ||
Sbjct 1821494 CAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTG 1821435
Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079
||| | ||||| | ||| ||||||| | |||||| || | || || || ||
Sbjct 1821434 GATTTTTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCGACCTCAAGGGTGATCGTCTT 1821375
Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| || || ||||| ||||| || |||||
Sbjct 1821374 GCCAGTGAGGGTTTTGACAAAGATCTGCAT 1821345
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380606533418034
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |