Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq21577 109 4e-19
seq12251 87.8 1e-12
seq32410 82.4 6e-11
>seq21577
Length=2421781
Score = 109 bits (120), Expect = 4e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|||||||||| | | || | ||| || ||||| ||||| || |||||||| |||
Sbjct 24572 CCACCTCTCAGACGCAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGAC 24631
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
||| | | | ||||| || |||||||| ||| | |||||||| || ||||| |||
Sbjct 24632 AGAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGA 24691
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| ||||| || || || ||| ||| || | || ||||| || || ||| ||
Sbjct 24692 ATGCCTTCCTTATCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTTGGTTCCACC 24751
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| | || ||||||||||| |||| || || ||||| || ||||||
Sbjct 24752 TCAAGAGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCATA 24799
Score = 100 bits (110), Expect = 2e-16
Identities = 163/232 (70%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|||||||||| | | || | ||| |||||||| || || || |||||||||||
Sbjct 25028 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGAC 25087
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
|| | | | ||||| || || ||||||||| | |||| ||| || || || ||
Sbjct 25088 AGCGTGCGTCCATCTTCCAACTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGG 25147
Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
|| ||||| ||||| ||||| ||| || ||| | || ||||| ||||| || ||
Sbjct 25148 ATGCCTTCCTTGTCTTGGATTTTAGCT-TTCACATTCTCAATGGTGTCGCTGGGCTCAAC 25206
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367
|| | ||| ||||| || || ||||| || || ||||| || ||||| |||
Sbjct 25207 CTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTTT 25258
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|||||||||| | | || | || |||||||| || || || |||||||||||
Sbjct 24116 CCACCTCTCAGACGGAGCACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGAC 24175
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
|| | | | || || | || ||||||||| | |||| ||| || ||||| |||
Sbjct 24176 AGCGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 24235
Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
|| ||||| ||||| ||||| ||| || || | || ||||| ||||| || ||
Sbjct 24236 ATGCCTTCCTTGTCTTGGATTTTAGCT-TTGACGTTCTCAATGGTGTCGCTGGGCTCAAC 24294
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| | ||| ||||| || || ||||| || || ||||| || ||||||
Sbjct 24295 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATA 24343
>seq12251
Length=2530766
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219
||| | |||||| ||||| || |||||||| || || | | | ||||| | ||
Sbjct 1821548 ATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGACCATCTTCCAGCTG 1821489
Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279
||||||||| | ||||| | || ||||| ||||| ||||||||||| |||||
Sbjct 1821488 TTTGCCAGCAAAAATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATTTT 1821429
Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339
||| || | || ||||| ||||| || || || | ||| || || || || ||
Sbjct 1821428 TGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCGACCTCAAGGGTGATCGTCTTGCCAGT 1821369
Query 15340 CAGAGTTTTTACAAAAATTTGCATATTTGAAAATAAAA 15377
|| ||||| ||||| || ||||| | | || | ||||
Sbjct 1821368 GAGGGTTTTGACAAAGATCTGCATCTATAAACAAAAAA 1821331
>seq32410
Length=743546
Score = 82.4 bits (90), Expect = 6e-11
Identities = 145/207 (70%), Gaps = 6/207 (3%)
Strand=Plus/Minus
Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTTCTAAT 15217
||| | |||||| ||||| || |||||||| || | ||| || | ||||| |
Sbjct 172027 ATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAG--ACAATGTGCGGCCATCTTCCAGC 171970
Query 15218 TGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT-CACAAAT 15276
|||||||| || | ||||| | || ||||| ||||| |||||||||| | |
Sbjct 171969 TGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGACC 171910
Query 15277 TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACC 15336
||||| ||| || | || ||||| ||||| || || || | ||| ||||| |||||
Sbjct 171909 TTTGC-CTTGACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTACC 171851
Query 15337 TGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || ||||| ||||| || |||||
Sbjct 171850 AGTGAGTGTTTTGACAAAGATCTGCAT 171824
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361454530691793
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |