Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq32410 96.9 2e-15 seq12251 95.1 8e-15 >seq32410 Length=743546 Score = 96.9 bits (106), Expect = 2e-15 Identities = 165/238 (69%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 33136 ATCTTCACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTA 33195 |||| ||| || || | |||||||||| |||||| || |||||||| || || ||||| Sbjct 172513 ATCTGAACCTCCCCTGAGACGCAACACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTA 172454 Query 33196 ATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTC 33255 |||||||| || | || |||| || || || ||| || || | |||||||| Sbjct 172453 GTCAGACAATGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTC 172394 Query 33256 CGTGGGTATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTT 33312 | ||| ||||||||||| || | | | ||| || || | | ||| |||||| | Sbjct 172393 AGGGGGAATGCCTTCTTTGTCCTGGATCTTAGCC---TTGACGTTCTCAATTGTGTCGCT 172337 Query 33313 GGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || | ||| || || || || || || || || | || || ||||| || |||||| Sbjct 172336 TGGCTCAACCTCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCATG 172279 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| ||| | |||||| || |||||||| || || ||||| |||||||| || | Sbjct 172038 CGCAGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAATGTGCGGCCA 171979 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| || || || ||| || || | |||||||| | ||| ||||||||||| Sbjct 171978 TCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTG 171919 Query 33275 TCGCTAATCGCCTG-TTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 || || | || || || | | ||| |||||| | || | ||| || || || || Sbjct 171918 TC-CTGGACCTTTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGAT 171860 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || ||||| || || || ||||| Sbjct 171859 GGTCTTACCAGTGAGTGTTTTGACAAAGATCTGCAT 171824 >seq12251 Length=2530766 Score = 95.1 bits (104), Expect = 8e-15 Identities = 164/237 (69%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 33136 ATCTTCACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTA 33195 |||| ||| || || | |||| ||||| |||||| || |||||||| || || ||||| Sbjct 1821578 ATCTGAACCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTA 1821519 Query 33196 ATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTC 33255 ||||||| || | || |||| || || ||| ||| || || | |||||||| Sbjct 1821518 GTCAGACAGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGGTC 1821459 Query 33256 CGTGGGTATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTT 33312 | ||| ||||||||||| || | | | ||| || || | | ||| |||||| | Sbjct 1821458 AGGGGGAATGCCTTCTTTGTCCTGGATTTTTGCC---TTGACGTTCTCAATGGTGTCGCT 1821402 Query 33313 GGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || | || || || || ||||| || || || || ||||| || || || ||||| Sbjct 1821401 TGGCTCGACCTCAAGGGTGATCGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 1821345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318139771149354