Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq32410 96.9 2e-15
seq12251 95.1 8e-15
>seq32410
Length=743546
Score = 96.9 bits (106), Expect = 2e-15
Identities = 165/238 (69%), Gaps = 6/238 (3%)
Strand=Plus/Minus
Query 33136 ATCTTCACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTA 33195
|||| ||| || || | |||||||||| |||||| || |||||||| || || |||||
Sbjct 172513 ATCTGAACCTCCCCTGAGACGCAACACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTA 172454
Query 33196 ATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTC 33255
|||||||| || | || |||| || || || ||| || || | ||||||||
Sbjct 172453 GTCAGACAATGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTC 172394
Query 33256 CGTGGGTATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTT 33312
| ||| ||||||||||| || | | | ||| || || | | ||| |||||| |
Sbjct 172393 AGGGGGAATGCCTTCTTTGTCCTGGATCTTAGCC---TTGACGTTCTCAATTGTGTCGCT 172337
Query 33313 GGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370
|| | ||| || || || || || || || || | || || ||||| || ||||||
Sbjct 172336 TGGCTCAACCTCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCATG 172279
Score = 86.0 bits (94), Expect = 4e-12
Identities = 150/216 (69%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
|||| ||| | |||||| || |||||||| || || ||||| |||||||| || |
Sbjct 172038 CGCAGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAATGTGCGGCCA 171979
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274
|| |||| || || || ||| || || | |||||||| | ||| |||||||||||
Sbjct 171978 TCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTG 171919
Query 33275 TCGCTAATCGCCTG-TTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333
|| || | || || || | | ||| |||||| | || | ||| || || || ||
Sbjct 171918 TC-CTGGACCTTTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGAT 171860
Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| || || || || ||||| || || || |||||
Sbjct 171859 GGTCTTACCAGTGAGTGTTTTGACAAAGATCTGCAT 171824
>seq12251
Length=2530766
Score = 95.1 bits (104), Expect = 8e-15
Identities = 164/237 (69%), Gaps = 6/237 (3%)
Strand=Plus/Minus
Query 33136 ATCTTCACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTA 33195
|||| ||| || || | |||| ||||| |||||| || |||||||| || || |||||
Sbjct 1821578 ATCTGAACCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTA 1821519
Query 33196 ATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTC 33255
||||||| || | || |||| || || ||| ||| || || | ||||||||
Sbjct 1821518 GTCAGACAGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGGTC 1821459
Query 33256 CGTGGGTATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTT 33312
| ||| ||||||||||| || | | | ||| || || | | ||| |||||| |
Sbjct 1821458 AGGGGGAATGCCTTCTTTGTCCTGGATTTTTGCC---TTGACGTTCTCAATGGTGTCGCT 1821402
Query 33313 GGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| | || || || || ||||| || || || || ||||| || || || |||||
Sbjct 1821401 TGGCTCGACCTCAAGGGTGATCGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 1821345
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318139771149354
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |