Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq12251 176 1e-38
seq32410 167 5e-36
seq21577 145 2e-29
seq8150 136 9e-27
seq130830 111 4e-19
seq36865 104 5e-17
seq34520 104 5e-17
seq19765 104 5e-17
seq3015 102 2e-16
>seq12251
Length=2530766
Score = 176 bits (194), Expect = 1e-38
Identities = 166/212 (78%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || ||||| || || || |||||||| || || |||||||| || || | ||| |||
Sbjct 1821556 AGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGACCATCT 1821497
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| || ||||| ||||||||||| | |||||| || ||||| || || |||||||| |||
Sbjct 1821496 TCCAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCC 1821437
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|| || ||||| || || || || | ||| ||||| || || ||||| || || || |||
Sbjct 1821436 TGGATTTTTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCGACCTCAAGGGTGATCGTC 1821377
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| ||||| || ||||| ||||| ||||||||
Sbjct 1821376 TTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 1821345
>seq32410
Length=743546
Score = 167 bits (184), Expect = 5e-36
Identities = 175/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || || || || | || || ||||| || || || |||||||| || || ||||||
Sbjct 172053 ATGCCTCCCCTGAGACGCAGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCA 171994
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| | || | || ||||| || ||||| || ||||| || | |||||| || |||||
Sbjct 171993 GACAATGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGG 171934
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || |||||||| ||||| | |||||| || || || || | ||| ||||| || ||
Sbjct 171933 GGAATGCCTTCTTTGTCCTGGACCTTTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCA 171874
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || || || ||||||||||| |||||||| ||||| ||||||||
Sbjct 171873 ACCTCAAGGGTGATGGTCTTACCAGTGAGTGTTTTGACAAAGATCTGCAT 171824
>seq21577
Length=2421781
Score = 145 bits (160), Expect = 2e-29
Identities = 172/233 (74%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| || | || || ||||| | || ||||| ||||| || || || |||
Sbjct 25025 ATACCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCA 25084
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | || ||||| | || || ||||| || || || | ||| |||||||||
Sbjct 25085 GACAGCGTGCGTCCATCTTCCAACTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGA 25144
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || || || || || ||||| ||||| || | ||| ||||| || ||
Sbjct 25145 GGGATGCCTTCCTTGTCTTGGATTTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCA 25204
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
||||| || || || ||||| ||||| || || || ||||| |||||||| ||
Sbjct 25205 ACCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTT 25257
Score = 136 bits (150), Expect = 9e-27
Identities = 172/235 (73%), Gaps = 1/235 (0%)
Strand=Plus/Plus
Query 104326 ATTTATT-CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTAT 104384
||| ||| ||||| | || | || || ||||| | || || || ||||| || || |
Sbjct 23880 ATTAATTGCCCCCACGAAGACGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGT 23939
Query 104385 AGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGAT 104444
|||| || || || | || ||||| || || || ||||| || || || | ||| ||||
Sbjct 23940 AGTCGGACAGCGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGAT 23999
Query 104445 CAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAG 104504
||||||| || ||||| || ||||| ||||| || || || || || | ||| ||||| |
Sbjct 24000 CAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGG 24059
Query 104505 GTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
| || ||||| || || || ||||| ||||| | || || ||||| ||||||||
Sbjct 24060 GCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 24114
>seq8150
Length=1005622
Score = 136 bits (150), Expect = 9e-27
Identities = 170/233 (73%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || || || || | || || || || | || || || ||||| || || |||||
Sbjct 148747 ATGCCTCCCCTAAGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCG 148806
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | || ||||| || || || ||||| || || || | ||| |||||||||
Sbjct 148807 GACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGA 148866
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || || || || || ||||| ||||| || | ||| ||||| || ||
Sbjct 148867 GGAATGCCTTCCTTGTCTTGGATTTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCA 148926
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
||||| || || || ||||| ||||| || || || ||||| |||||||| ||
Sbjct 148927 ACCTCAAGGGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTT 148979
>seq130830
Length=505
Score = 111 bits (122), Expect = 4e-19
Identities = 96/119 (81%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 104441 TGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCG 104500
|| ||||| || || |||||||| ||||| ||||| || || ||||| || | ||| |||
Sbjct 504 TGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCG 445
Query 104501 CTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || || ||||| || || || ||||||||||| |||||||| ||||| ||||||||
Sbjct 444 CTTGGCTCAACCTCAAGGGTGATGGTCTTACCAGTGAGTGTTTTGACAAAGATCTGCAT 386
>seq36865
Length=2971667
Score = 104 bits (114), Expect = 5e-17
Identities = 107/139 (77%), Gaps = 1/139 (1%)
Strand=Plus/Plus
Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185
||||| | ||||| || ||||| || || ||||| || ||||| || || || |||||
Sbjct 1669430 GGAGAGCGATTAGTAGCATTTGCAGCAGTGGAAGGCATCTTCTTCTCTGGATCATTTGCT 1669489
Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245
|| |||| |||||||||||||||||||| ||||| ||| | || | ||| || ||| |
Sbjct 1669490 GCCATCTACTGGTTGAAGAAAAGAGGCCTGATGCCCGGACTCACCTACTCCAATGAACTC 1669549
Query 269246 ATAAGCAGGGACGAAGGTT 269264
|| ||||| || | |||||
Sbjct 1669550 ATCAGCAGAGATG-AGGTT 1669567
>seq34520
Length=2775569
Score = 104 bits (114), Expect = 5e-17
Identities = 104/134 (78%), Gaps = 2/134 (1%)
Strand=Plus/Plus
Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185
||||| || | || |||||||| ||||| ||||| || ||||||| ||||||||||||
Sbjct 505213 GGAGAGAG--TGGTGGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTTGGGGTCTTTTGCT 505270
Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245
|||| || ||| | ||||| ||||| || ||||| ||| | || ||||| || ||| |
Sbjct 505271 TCTATTTTCTGGCTAAAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGAACTT 505330
Query 269246 ATAAGCAGGGACGA 269259
|| ||||| || ||
Sbjct 505331 ATCAGCAGAGATGA 505344
>seq19765
Length=1114994
Score = 104 bits (114), Expect = 5e-17
Identities = 104/134 (78%), Gaps = 2/134 (1%)
Strand=Plus/Plus
Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185
||||| || | || |||||||| ||||| ||||| || ||||||| |||||||||||
Sbjct 414344 GGAGAGAG--TGGTGGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTTTGGGTCTTTTGCT 414401
Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245
|||| || ||||| ||||| ||||| || ||||| ||| | || ||||| || ||| |
Sbjct 414402 TCTATTTTCTGGTTAAAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGAACTT 414461
Query 269246 ATAAGCAGGGACGA 269259
|| ||||| || ||
Sbjct 414462 ATCAGCAGAGATGA 414475
>seq3015
Length=1951583
Score = 102 bits (112), Expect = 2e-16
Identities = 105/136 (77%), Gaps = 1/136 (1%)
Strand=Plus/Minus
Query 269135 TTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTT 269194
||||| || ||||| || || ||||| || ||||| || || || ||||| || ||||
Sbjct 197325 TTAGTAGCATTTGCAGCAGTGGAAGGCATCTTCTTCTCTGGATCATTTGCTGCCATCTAC 197266
Query 269195 TGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGG 269254
|||||||||||||||||||| ||||| ||| | || | ||| || ||| | || |||||
Sbjct 197265 TGGTTGAAGAAAAGAGGCCTGATGCCCGGACTCACCTACTCCAATGAACTCATCAGCAGA 197206
Query 269255 GACGAAGGTTTACACT 269270
|| | ||||| | |||
Sbjct 197205 GATG-AGGTTAAAACT 197191
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1148976471965484
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |