Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq40023 86.0 3e-12
seq35133 86.0 3e-12
seq15960 86.0 3e-12
seq10524 86.0 3e-12
seq97743 84.2 1e-11
seq39872 84.2 1e-11
seq19475 84.2 1e-11
seq17334 84.2 1e-11
seq174 84.2 1e-11
seq36865 82.4 4e-11
seq34577 82.4 4e-11
seq17975 82.4 4e-11
seq10972 82.4 4e-11
seq8091 82.4 4e-11
>seq40023
Length=2177
Score = 86.0 bits (94), Expect = 3e-12
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||| | | |||||||||| ||||||| ||||||||||||| ||||||| ||||||
Sbjct 564 TGGCCCGTAAGGGGATCGAACCCACGACCTTGGCGTTATTAGCACCACGCTCTAACCAAC 623
Query 11516 TGAGCTAATGGGCC 11529
|||||||| ||||
Sbjct 624 TGAGCTAACCGGCC 637
>seq35133
Length=541
Score = 86.0 bits (94), Expect = 3e-12
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||| | | |||||||||| ||||||| ||||||||||||| ||||||| ||||||
Sbjct 264 TGGCCCGTACAGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAAC 205
Query 11516 TGAGCTAATGGGCC 11529
|||||||| ||||
Sbjct 204 TGAGCTAACCGGCC 191
>seq15960
Length=44683
Score = 86.0 bits (94), Expect = 3e-12
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||| | | |||||||||| ||||||| ||||||||||||| ||||||| ||||||
Sbjct 1650 TGGCCCGTAAGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAAC 1709
Query 11516 TGAGCTAATGGGCC 11529
|||||||| ||||
Sbjct 1710 TGAGCTAACCGGCC 1723
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 5295 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 5354
Query 11528 CC 11529
||
Sbjct 5355 CC 5356
>seq10524
Length=674422
Score = 86.0 bits (94), Expect = 3e-12
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513
|||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||
Sbjct 647023 ATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCA 646964
Query 11514 ACTGAGCTAATGGGCC 11529
|||||||||| ||||
Sbjct 646963 ACTGAGCTAACCGGCC 646948
>seq97743
Length=282
Score = 84.2 bits (92), Expect = 1e-11
Identities = 59/68 (87%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||| || |||||||||| ||||||| |||||||||||| | ||||| ||||||
Sbjct 199 TGGCCCATAAAGGGATCGAACCCGCGACCTTGACGTTATTAGCACCATGCTCTAACCAAC 140
Query 11516 TGAGCTAA 11523
||||||||
Sbjct 139 TGAGCTAA 132
>seq39872
Length=360399
Score = 84.2 bits (92), Expect = 1e-11
Identities = 72/89 (81%), Gaps = 2/89 (2%)
Strand=Plus/Minus
Query 11443 TAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
||||||| | || |||||| | |||||||||| ||||||| |||||||||||||
Sbjct 231689 TAAAAAAATAGATGCTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCAC 231630
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||| |||||||||||||| ||||
Sbjct 231629 CACGCTCTAACCAACTGAGCTAACCGGCC 231601
>seq19475
Length=236004
Score = 84.2 bits (92), Expect = 1e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||| | |||||||||| ||||||| ||||||||||||| ||||||| |||||
Sbjct 230436 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 230377
Query 11515 CTGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 230376 CTGAGCTAACCGGCC 230362
>seq17334
Length=1192801
Score = 84.2 bits (92), Expect = 1e-11
Identities = 68/83 (82%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 11447 AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCT 11506
||| || | |||||| | |||||||||| ||||||| ||||||||||||| |||||
Sbjct 1180943 AAAACACACTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCT 1181002
Query 11507 CTRACCAACTGAGCTAATGGGCC 11529
|| |||||||||||||| ||||
Sbjct 1181003 CTAACCAACTGAGCTAACCGGCC 1181025
>seq174
Length=30756
Score = 84.2 bits (92), Expect = 1e-11
Identities = 59/68 (87%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||| | | |||||||||| ||||||| ||||||||||||| ||||||| |||||
Sbjct 13185 TTGGCCCGTAAGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 13244
Query 11515 CTGAGCTA 11522
||||||||
Sbjct 13245 CTGAGCTA 13252
>seq36865
Length=2971667
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 1144050 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1144109
Query 11528 CC 11529
||
Sbjct 1144110 CC 1144111
>seq34577
Length=9248
Score = 82.4 bits (90), Expect = 4e-11
Identities = 52/57 (91%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAAT 11524
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||||
Sbjct 2257 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAAT 2201
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 5547 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 5488
Query 11528 CC 11529
||
Sbjct 5487 CC 5486
>seq17975
Length=1748178
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 1117651 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1117710
Query 11528 CC 11529
||
Sbjct 1117711 CC 1117712
>seq10972
Length=1890035
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 557069 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 557128
Query 11528 CC 11529
||
Sbjct 557129 CC 557130
>seq8091
Length=1204645
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 992957 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 992898
Query 11528 CC 11529
||
Sbjct 992897 CC 992896
Lambda K H
0.639 0.410 0.921
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 260967993126148
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |