Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq40023 86.0 3e-12 seq35133 86.0 3e-12 seq15960 86.0 3e-12 seq10524 86.0 3e-12 seq97743 84.2 1e-11 seq39872 84.2 1e-11 seq19475 84.2 1e-11 seq17334 84.2 1e-11 seq174 84.2 1e-11 seq36865 82.4 4e-11 seq34577 82.4 4e-11 seq17975 82.4 4e-11 seq10972 82.4 4e-11 seq8091 82.4 4e-11 >seq40023 Length=2177 Score = 86.0 bits (94), Expect = 3e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| | | |||||||||| ||||||| ||||||||||||| ||||||| |||||| Sbjct 564 TGGCCCGTAAGGGGATCGAACCCACGACCTTGGCGTTATTAGCACCACGCTCTAACCAAC 623 Query 11516 TGAGCTAATGGGCC 11529 |||||||| |||| Sbjct 624 TGAGCTAACCGGCC 637 >seq35133 Length=541 Score = 86.0 bits (94), Expect = 3e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| | | |||||||||| ||||||| ||||||||||||| ||||||| |||||| Sbjct 264 TGGCCCGTACAGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAAC 205 Query 11516 TGAGCTAATGGGCC 11529 |||||||| |||| Sbjct 204 TGAGCTAACCGGCC 191 >seq15960 Length=44683 Score = 86.0 bits (94), Expect = 3e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| | | |||||||||| ||||||| ||||||||||||| ||||||| |||||| Sbjct 1650 TGGCCCGTAAGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAAC 1709 Query 11516 TGAGCTAATGGGCC 11529 |||||||| |||| Sbjct 1710 TGAGCTAACCGGCC 1723 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 5295 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 5354 Query 11528 CC 11529 || Sbjct 5355 CC 5356 >seq10524 Length=674422 Score = 86.0 bits (94), Expect = 3e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||||| | |||||||||| ||||||| ||||||||||||| ||||||| |||| Sbjct 647023 ATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCA 646964 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 646963 ACTGAGCTAACCGGCC 646948 >seq97743 Length=282 Score = 84.2 bits (92), Expect = 1e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| || |||||||||| ||||||| |||||||||||| | ||||| |||||| Sbjct 199 TGGCCCATAAAGGGATCGAACCCGCGACCTTGACGTTATTAGCACCATGCTCTAACCAAC 140 Query 11516 TGAGCTAA 11523 |||||||| Sbjct 139 TGAGCTAA 132 >seq39872 Length=360399 Score = 84.2 bits (92), Expect = 1e-11 Identities = 72/89 (81%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 11443 TAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||| | || |||||| | |||||||||| ||||||| ||||||||||||| Sbjct 231689 TAAAAAAATAGATGCTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCAC 231630 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||| |||| Sbjct 231629 CACGCTCTAACCAACTGAGCTAACCGGCC 231601 >seq19475 Length=236004 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 230436 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 230377 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 230376 CTGAGCTAACCGGCC 230362 >seq17334 Length=1192801 Score = 84.2 bits (92), Expect = 1e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 11447 AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCT 11506 ||| || | |||||| | |||||||||| ||||||| ||||||||||||| ||||| Sbjct 1180943 AAAACACACTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCT 1181002 Query 11507 CTRACCAACTGAGCTAATGGGCC 11529 || |||||||||||||| |||| Sbjct 1181003 CTAACCAACTGAGCTAACCGGCC 1181025 >seq174 Length=30756 Score = 84.2 bits (92), Expect = 1e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 13185 TTGGCCCGTAAGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 13244 Query 11515 CTGAGCTA 11522 |||||||| Sbjct 13245 CTGAGCTA 13252 >seq36865 Length=2971667 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1144050 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1144109 Query 11528 CC 11529 || Sbjct 1144110 CC 1144111 >seq34577 Length=9248 Score = 82.4 bits (90), Expect = 4e-11 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAAT 11524 |||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||||| Sbjct 2257 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAAT 2201 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 5547 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 5488 Query 11528 CC 11529 || Sbjct 5487 CC 5486 >seq17975 Length=1748178 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1117651 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1117710 Query 11528 CC 11529 || Sbjct 1117711 CC 1117712 >seq10972 Length=1890035 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 557069 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 557128 Query 11528 CC 11529 || Sbjct 557129 CC 557130 >seq8091 Length=1204645 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 992957 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 992898 Query 11528 CC 11529 || Sbjct 992897 CC 992896 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260967993126148