Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq12251 136 4e-27
seq32410 134 1e-26
seq21577 122 8e-23
seq8150 109 5e-19
>seq12251
Length=2530766
Score = 136 bits (150), Expect = 4e-27
Identities = 171/230 (74%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
||||| || | |||| ||||| ||||| || || || || || | ||| || || |
Sbjct 1821571 CCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 1821512
Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898
| |||| || ||| ||||||||||| || |||| || || || ||||| || || |
Sbjct 1821511 A--GTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCAGGGG 1821454
Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCG 94957
|||| ||||||||||| | ||||||||||||||| | | ||||| || ||| |||
Sbjct 1821453 GAATGCCTTCTTTGTCCTGGATTTTTGCCTTGACGTTCTCAATGGTGTC-GCTTGGCTCG 1821395
Query 94958 ACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| |||| ||||| || || ||||| || ||||| ||||||||||||||
Sbjct 1821394 ACCTCAAGGGTGATCGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 1821345
>seq32410
Length=743546
Score = 134 bits (148), Expect = 1e-26
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
||||| || | |||| ||| | ||||| || || || || || | ||| || || |
Sbjct 172050 CCTCCCCTGAGACGCAGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 171991
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| | ||| ||||||||||| ||| ||||||| || || ||||| || || |||
Sbjct 171990 AATGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGA 171931
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGAC 94959
|| ||||||||||| | | |||||||||||| | | ||||| || ||| || ||
Sbjct 171930 ATGCCTTCTTTGTCCTGGACCTTTGCCTTGACGTTCTCAATGGTGTC-GCTTGGCTCAAC 171872
Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||| |||||||| || ||||| || ||||| ||||||||||||||
Sbjct 171871 CTCAAGGGTGATGGTCTTACCAGTGAGTGTTTTGACAAAGATCTGCAT 171824
Score = 129 bits (142), Expect = 5e-25
Identities = 168/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
||||| || | |||||||||| ||||| || || || || || | ||| || || |
Sbjct 172506 CCTCCCCTGAGACGCAACACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 172447
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| | ||| ||||||||||| ||| ||||||| || || ||||| || || |||
Sbjct 172446 AATGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGA 172387
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGAC 94959
|| ||||||||||| | || || ||||||||| | | ||||| || ||| || ||
Sbjct 172386 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACGTTCTCAATTGTGTC-GCTTGGCTCAAC 172328
Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|||| |||||||| || || || | || || || |||||||||||||
Sbjct 172327 CTCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCATGC 172278
Score = 120 bits (132), Expect = 3e-22
Identities = 166/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
||||| || | |||| ||| | ||||| || || || || || | ||| || || |
Sbjct 172278 CCTCCCCTGAGACGCAGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 172219
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| | ||| ||||||||||| ||| ||||||| || || ||||| || || |||
Sbjct 172218 AGTGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGA 172159
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGAC 94959
|| ||||||||||| | | |||||||||||| | | ||||| || ||| || ||
Sbjct 172158 ATGCCTTCTTTGTCCTGGACCTTTGCCTTGACGTTCTCAATGGTGTC-GCTTGGCTCAAC 172100
Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|||| |||||||| || || || | || || || |||||||||||||
Sbjct 172099 CTCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCATGC 172050
>seq21577
Length=2421781
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| ||||||| || | ||||| ||| | || |||||||| || | ||| ||||| |
Sbjct 24116 CCACCTCTCAGACGGAGCACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGAC 24175
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| |||||||||||| || || | ||||| | | ||||| || ||||||
Sbjct 24176 AGCGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 24235
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| ||||| ||||| | ||||| || |||||| | | ||||| | | || ||
Sbjct 24236 ATGCCTTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAACC 24295
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||| |||||||| || ||||| || || |||||||||||||||||
Sbjct 24296 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 24342
Score = 111 bits (122), Expect = 1e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| ||||||| |||| || | || | || || || || || | ||| || ||| |
Sbjct 24572 CCACCTCTCAGACGCAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGAC 24631
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| |||| ||| |||| |||||| ||| | ||||| || | ||||| || ||||||
Sbjct 24632 AGAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGA 24691
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGT-CGAC 94959
|| ||||| || || | || || ||||||||| | | |||||| | |||| | ||
Sbjct 24692 ATGCCTTCCTTATCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCA-CTTGGTTCCAC 24750
Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||| ||||||||||| ||||| | || |||||||||||||||||
Sbjct 24751 CTCAAGAGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 24798
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| ||||||| || | ||||| ||| | || || ||||| || | ||| || || |
Sbjct 24800 CCACCTCTCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 24859
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| |||| ||| |||||||| || ||| ||||||| | | ||||| || ||||||
Sbjct 24860 AGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGAGGA 24919
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| ||||| ||||| | ||||| || |||||| | | ||||| | | || ||
Sbjct 24920 ATGCCTTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAACC 24979
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | |||||||| || ||||| || || || || |||||||||||
Sbjct 24980 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 25026
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| ||||||| |||| || | || | || || ||||| || | ||| || ||| |
Sbjct 24344 CCACCTCTCAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 24403
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| |||||||||||| || || | ||||| | | ||||| || ||||||
Sbjct 24404 AGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 24463
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| ||||| || || | || || ||||| ||| | | |||||| | | || ||
Sbjct 24464 ATGCCTTCCTTATCTTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACT 24523
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | ||||| ||||||||||| || || || ||||||||||||||
Sbjct 24524 TCCAAAGTGATTGTTTTTCCAGTTAGCGTCTTGACAAAGATCTGCAT 24570
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 94805 TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGT 94864
|||| || || ||||| || | ||| || ||| || ||| ||| ||||||||
Sbjct 23912 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCTTCCAGCTGC 23971
Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924
|| || | ||||| | | |||||||| |||||||| ||||| ||||| | || ||
Sbjct 23972 TTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTG 24031
Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984
||||| ||| | | ||||| | | || || |||| |||||||| || |||||
Sbjct 24032 GCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTC 24091
Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007
| || |||||||||||||||||
Sbjct 24092 AAGGTCTTCACAAAGATCTGCAT 24114
Score = 91.5 bits (100), Expect = 1e-13
Identities = 160/233 (69%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| ||||||| |||| || | || | || |||||||| || | ||| ||||| |
Sbjct 25028 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGAC 25087
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| ||| |||| ||| || || | ||||| | | |||||||| |||||
Sbjct 25088 AGCGTGCGTCCATCTTCCAACTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGG 25147
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| ||||| ||||| | ||||| || || || | | ||||| | | || ||
Sbjct 25148 ATGCCTTCCTTGTCTTGGATTTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCAACC 25207
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTAC 95013
|| | |||||||| || ||||| || || ||||||||||||||||| ||||
Sbjct 25208 TCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTTTAC 25260
>seq8150
Length=1005622
Score = 109 bits (120), Expect = 5e-19
Identities = 164/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
||||| || | || | ||||| ||| | ||| || ||||| || | ||| || ||| |
Sbjct 148750 CCTCCCCTAAGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 148809
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| ||| |||||||| || || | ||||| | | |||||||| ||||||
Sbjct 148810 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGA 148869
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| ||||| ||||| | ||||| || || || | | ||||| | | || ||
Sbjct 148870 ATGCCTTCCTTGTCTTGGATTTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCAACC 148929
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTAC 95013
|||| |||||||| || ||||| || || ||||||||||||||||| ||||
Sbjct 148930 TCAAGGGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTTTAC 148982
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447371233610280
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