Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq12251 105 6e-18 seq32410 95.1 1e-14 seq21577 86.0 6e-12 seq15552 84.2 2e-11 >seq12251 Length=2530766 Score = 105 bits (116), Expect = 6e-18 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| | ||||| || |||||||| | || | || ||| | Sbjct 1821345 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACGATCACCCTTGAGGTCGAGCCAAGC 1821404 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| ||| || ||||||||||| || || || || || Sbjct 1821405 GACACCATTGAGAACGTCAAGGCAAAAATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 1821464 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG-AAAC-GTCAGCGACTATA 26946 || || | |||| | |||||||| || ||||||| | | | || ||| ||||| | Sbjct 1821465 CAGAGGTTGATTTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTC--TGACTACA 1821522 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||| || ||||| || || | |||||||| ||| | || || ||||| Sbjct 1821523 ACATCCAGAAAGAGTCCACCTTGCATCTGGTGCTGCGTCTCAGGGGAGG 1821571 >seq32410 Length=743546 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| |||||| | ||||| || | |||||| | || | || ||| | Sbjct 171824 ATGCAGATCTTTGTCAAAACACTCACTGGTAAGACCATCACCCTTGAGGTTGAGCCAAGC 171883 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| |||| | ||||||||||| || || || || || Sbjct 171884 GACACCATTGAGAACGTCAAGGCAAAGGTCCAGGACAAAGAAGGCATTCCCCCTGACCAG 171943 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | || | | ||||||||| || ||||||| | | | ||||| ||| Sbjct 171944 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACTACAAC 172003 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || ||||| || || | ||||| || ||| | || || ||||| Sbjct 172004 ATCCAGAAAGAGTCCACCTTGCATCTTGTGCTGCGTCTCAGGGGAGG 172050 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || || || || || | |||||| | || | || ||| | Sbjct 172052 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 172111 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| |||| | ||||||||||| || || || || || Sbjct 172112 GACACCATTGAGAACGTCAAGGCAAAGGTCCAGGACAAAGAAGGCATTCCCCCTGACCAG 172171 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG-AAAC-GTCAGCGACTATA 26946 || || | || | | ||||||||| || ||||||| | | || ||| ||||| | Sbjct 172172 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACACTGTC--TGACTACA 172229 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||| || ||||| || || | ||||| || ||| | || || ||||| Sbjct 172230 ACATCCAGAAAGAGTCCACCTTGCATCTTGTGCTGCGTCTCAGGGGAGG 172278 >seq21577 Length=2421781 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || ||||||||||| | ||||| | ||| | || | | Sbjct 24570 ATGCAGATCTTTGTCAAGACGCTAACTGGAAAAACAATCACTTTGGAAGTTGAGCCCAGT 24511 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | || || ||||| || || ||||| || ||||| || || Sbjct 24510 GACACCATTGAGAACGTGAAGGCCAAGATCCAAGATAAGGAAGGCATTCCTCCTGACCAG 24451 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | || ||||| || || || |||| | | | | |||||| ||| Sbjct 24450 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACCCTGTCCGACTACAAC 24391 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || || || || ||||||| |||||| | || ||||| || Sbjct 24390 ATCCAGAAGGAGTCCACCCTCCATCTCGTCCTGCGTCTGAGAGGTGG 24344 >seq15552 Length=1137653 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 147461 CACTTGATACTCGCCCGACAGAACTCTTCGTACGTACAAATTACTAGTAAACGGCTCGAA 147520 ||| ||| |||| || ||||||||||| ||| ||| | || |||||| ||||||||| Sbjct 1136614 CACCTGAAACTCTCCAGACAGAACTCTGCGTGTGTAGATGTTGCTAGTATACGGCTCGAT 1136555 Query 147521 CGACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATG 147566 ||||| ||||| || || ||||| ||||| | || || |||||| Sbjct 1136554 TGACTCATTGTTGCCCAGGATCTGAGCAGTGGAGGCAGTGGGCATG 1136509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477680106972560