Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq12251 105 6e-18
seq32410 95.1 1e-14
seq21577 86.0 6e-12
seq15552 84.2 2e-11
>seq12251
Length=2530766
Score = 105 bits (116), Expect = 6e-18
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | ||||| ||||| | ||||| || |||||||| | || | || ||| |
Sbjct 1821345 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACGATCACCCTTGAGGTCGAGCCAAGC 1821404
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|||||||| ||| | ||||| ||| || ||||||||||| || || || || ||
Sbjct 1821405 GACACCATTGAGAACGTCAAGGCAAAAATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 1821464
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG-AAAC-GTCAGCGACTATA 26946
|| || | |||| | |||||||| || ||||||| | | | || ||| ||||| |
Sbjct 1821465 CAGAGGTTGATTTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTC--TGACTACA 1821522
Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
|||| || ||||| || || | |||||||| ||| | || || |||||
Sbjct 1821523 ACATCCAGAAAGAGTCCACCTTGCATCTGGTGCTGCGTCTCAGGGGAGG 1821571
>seq32410
Length=743546
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | ||||| |||||| | ||||| || | |||||| | || | || ||| |
Sbjct 171824 ATGCAGATCTTTGTCAAAACACTCACTGGTAAGACCATCACCCTTGAGGTTGAGCCAAGC 171883
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|||||||| ||| | ||||| |||| | ||||||||||| || || || || ||
Sbjct 171884 GACACCATTGAGAACGTCAAGGCAAAGGTCCAGGACAAAGAAGGCATTCCCCCTGACCAG 171943
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| || | || | | ||||||||| || ||||||| | | | ||||| |||
Sbjct 171944 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACTACAAC 172003
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
|| || ||||| || || | ||||| || ||| | || || |||||
Sbjct 172004 ATCCAGAAAGAGTCCACCTTGCATCTTGTGCTGCGTCTCAGGGGAGG 172050
Score = 84.2 bits (92), Expect = 2e-11
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | || || || || || || || || | |||||| | || | || ||| |
Sbjct 172052 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 172111
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|||||||| ||| | ||||| |||| | ||||||||||| || || || || ||
Sbjct 172112 GACACCATTGAGAACGTCAAGGCAAAGGTCCAGGACAAAGAAGGCATTCCCCCTGACCAG 172171
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG-AAAC-GTCAGCGACTATA 26946
|| || | || | | ||||||||| || ||||||| | | || ||| ||||| |
Sbjct 172172 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACACTGTC--TGACTACA 172229
Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
|||| || ||||| || || | ||||| || ||| | || || |||||
Sbjct 172230 ACATCCAGAAAGAGTCCACCTTGCATCTTGTGCTGCGTCTCAGGGGAGG 172278
>seq21577
Length=2421781
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | ||||| || || ||||||||||| | ||||| | ||| | || | |
Sbjct 24570 ATGCAGATCTTTGTCAAGACGCTAACTGGAAAAACAATCACTTTGGAAGTTGAGCCCAGT 24511
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|||||||| ||| | || || ||||| || || ||||| || ||||| || ||
Sbjct 24510 GACACCATTGAGAACGTGAAGGCCAAGATCCAAGATAAGGAAGGCATTCCTCCTGACCAG 24451
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| | || || | || ||||| || || || |||| | | | | |||||| |||
Sbjct 24450 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACCCTGTCCGACTACAAC 24391
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
|| || || || || || ||||||| |||||| | || ||||| ||
Sbjct 24390 ATCCAGAAGGAGTCCACCCTCCATCTCGTCCTGCGTCTGAGAGGTGG 24344
>seq15552
Length=1137653
Score = 84.2 bits (92), Expect = 2e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 147461 CACTTGATACTCGCCCGACAGAACTCTTCGTACGTACAAATTACTAGTAAACGGCTCGAA 147520
||| ||| |||| || ||||||||||| ||| ||| | || |||||| |||||||||
Sbjct 1136614 CACCTGAAACTCTCCAGACAGAACTCTGCGTGTGTAGATGTTGCTAGTATACGGCTCGAT 1136555
Query 147521 CGACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATG 147566
||||| ||||| || || ||||| ||||| | || || ||||||
Sbjct 1136554 TGACTCATTGTTGCCCAGGATCTGAGCAGTGGAGGCAGTGGGCATG 1136509
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 477680106972560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |