Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq15552 98.7 3e-15
seq147642 96.9 9e-15
seq44218 87.8 5e-12
seq37825 87.8 5e-12
seq14570 87.8 5e-12
>seq15552
Length=1137653
Score = 98.7 bits (108), Expect = 3e-15
Identities = 90/114 (79%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170
|| ||| |||| |||| ||||||||| || || |||| ||||| || |||||||| |||
Sbjct 1133569 GCTCAGCAGCTGTGGTATGCCATCATTGAGTCTCAGACAGAGACCGGCACACCCTACATG 1133628
Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATT 364224
| ||||| ||| | ||||||||||| |||||||||| |||| || || |||
Sbjct 1133629 CTTTACAAGGATGCCTGCAACCGCAAAAGCAACCAGCAGAACCTGGGCACCATT 1133682
Score = 93.3 bits (102), Expect = 1e-13
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 364128 TGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTG 364187
||||||||| || || |||| ||||| || |||||||| ||| | ||||| ||| | ||
Sbjct 1133698 TGCCATCATTGAGTCTCAGACAGAGACCGGCACACCCTACATGCTTTACAAGGATGCCTG 1133757
Query 364188 CAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGA 364247
||||||||| |||||||||| |||| || || ||| | || ||| | || || ||
Sbjct 1133758 CAACCGCAAAAGCAACCAGCAGAACCTGGGCACCATTAAATGCAGTAACTTGTGCACAGA 1133817
Query 364248 GATTATTGAATACACC 364263
||| | || ||||||
Sbjct 1133818 AATTGTAGAGTACACC 1133833
Score = 86.0 bits (94), Expect = 2e-11
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809
|| ||||||||||| || || ||||| |||||||| || ||||| |||| |||| |||
Sbjct 1136504 GCTCCCATGCCCACTGCCTCCACTGCTCAGATCCTGGGCAACAATGAGTCAATCGAGCCG 1136563
Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGT 364859
| ||| ||||| | || ||||| | ||||| || ||||| |||| |||
Sbjct 1136564 TATACTAGCAACATCTACACACGCAGAGTTCTGTCTGGAGAGTTTCAGGT 1136613
>seq147642
Length=763
Score = 96.9 bits (106), Expect = 9e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 364128 TGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTG 364187
||||||||| || || |||| ||||| || |||||||| ||| | ||||| ||| | ||
Sbjct 763 TGCCATCATTGAGTCTCAGACAGAGACCGGCACACCCTACATGCTCTACAAGGATGCCTG 704
Query 364188 CAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGA 364247
|||||||||| |||||||||| |||| || || || | || ||| | || || ||
Sbjct 703 CAACCGCAAGAGCAACCAGCAGAACCTGGGCACCATCAAATGCAGTAACTTGTGCACAGA 644
Query 364248 GATTATTGAATACACC 364263
|||| | || ||||||
Sbjct 643 GATTGTAGAGTACACC 628
>seq44218
Length=785574
Score = 87.8 bits (96), Expect = 5e-12
Identities = 108/148 (73%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 363837 AGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCT 363896
||| || ||||||||||| || ||||| ||| || |||||||| || || |||||
Sbjct 784634 AGGAGCTTTTGCTATGTACCTGGAGCCCTGGCATTTTGACATTTTTGACTTCCTAGAGCT 784575
Query 363897 CCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGT 363956
|| || || || ||||||||| ||| || | |||||||| ||||| || ||| |
Sbjct 784574 TAAAAAGAATACTGGTAAAGAGGAACAGCGAGCTAGAGATCTGTTTTATGCCCTCTGGAT 784515
Query 363957 TTCTGACCATTTTATGAAGCGCGTGGAG 363984
|||| | || |||||||| ||||||
Sbjct 784514 CCCTGATCTCTTCATGAAGCGAGTGGAG 784487
>seq37825
Length=627708
Score = 87.8 bits (96), Expect = 5e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 12822 TGTTGATCCAAATGTCAGAGAATCCATGTCTTCAGTTGCTGTGGCATACGCTTTTCCTGT 12881
||| | ||||||||||||| |||||| ||||| |||||||||||||| | || ||||
Sbjct 508399 TGTCGTTCCAAATGTCAGACCATCCATATCTTCTGTTGCTGTGGCATAAACCTTCCCTGA 508458
Query 12882 TTTTACATATGCAGCACATGTAGCTTCGGCCTCACATGGTGCTTGAAC 12929
||| || |||||||| | || || ||||||||||| || | |||
Sbjct 508459 TTTCACCAGAGCAGCACAGCTCGCCTCCGCCTCACATGGAGCCTTAAC 508506
>seq14570
Length=4705
Score = 87.8 bits (96), Expect = 5e-12
Identities = 108/148 (73%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 363837 AGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCT 363896
||| || ||||||||||| || ||||| ||| || |||||||| || || |||||
Sbjct 768 AGGAGCTTTTGCTATGTACCTGGAGCCCTGGCATTTTGACATTTTTGACTTCCTAGAGCT 709
Query 363897 CCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGT 363956
|| || || || ||||||||| ||| || | |||||||| ||||| || ||| |
Sbjct 708 TAAAAAGAATACTGGTAAAGAGGAACAGCGAGCTAGAGATCTGTTTTATGCCCTCTGGAT 649
Query 363957 TTCTGACCATTTTATGAAGCGCGTGGAG 363984
|||| | || |||||||| ||||||
Sbjct 648 CCCTGATCTCTTCATGAAGCGAGTGGAG 621
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1300612039283286
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |