Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq15552 98.7 3e-15 seq147642 96.9 9e-15 seq44218 87.8 5e-12 seq37825 87.8 5e-12 seq14570 87.8 5e-12 >seq15552 Length=1137653 Score = 98.7 bits (108), Expect = 3e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| ||||| || |||||||| ||| Sbjct 1133569 GCTCAGCAGCTGTGGTATGCCATCATTGAGTCTCAGACAGAGACCGGCACACCCTACATG 1133628 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATT 364224 | ||||| ||| | ||||||||||| |||||||||| |||| || || ||| Sbjct 1133629 CTTTACAAGGATGCCTGCAACCGCAAAAGCAACCAGCAGAACCTGGGCACCATT 1133682 Score = 93.3 bits (102), Expect = 1e-13 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 364128 TGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTG 364187 ||||||||| || || |||| ||||| || |||||||| ||| | ||||| ||| | || Sbjct 1133698 TGCCATCATTGAGTCTCAGACAGAGACCGGCACACCCTACATGCTTTACAAGGATGCCTG 1133757 Query 364188 CAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGA 364247 ||||||||| |||||||||| |||| || || ||| | || ||| | || || || Sbjct 1133758 CAACCGCAAAAGCAACCAGCAGAACCTGGGCACCATTAAATGCAGTAACTTGTGCACAGA 1133817 Query 364248 GATTATTGAATACACC 364263 ||| | || |||||| Sbjct 1133818 AATTGTAGAGTACACC 1133833 Score = 86.0 bits (94), Expect = 2e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 || ||||||||||| || || ||||| |||||||| || ||||| |||| |||| ||| Sbjct 1136504 GCTCCCATGCCCACTGCCTCCACTGCTCAGATCCTGGGCAACAATGAGTCAATCGAGCCG 1136563 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGT 364859 | ||| ||||| | || ||||| | ||||| || ||||| |||| ||| Sbjct 1136564 TATACTAGCAACATCTACACACGCAGAGTTCTGTCTGGAGAGTTTCAGGT 1136613 >seq147642 Length=763 Score = 96.9 bits (106), Expect = 9e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 364128 TGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTG 364187 ||||||||| || || |||| ||||| || |||||||| ||| | ||||| ||| | || Sbjct 763 TGCCATCATTGAGTCTCAGACAGAGACCGGCACACCCTACATGCTCTACAAGGATGCCTG 704 Query 364188 CAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGA 364247 |||||||||| |||||||||| |||| || || || | || ||| | || || || Sbjct 703 CAACCGCAAGAGCAACCAGCAGAACCTGGGCACCATCAAATGCAGTAACTTGTGCACAGA 644 Query 364248 GATTATTGAATACACC 364263 |||| | || |||||| Sbjct 643 GATTGTAGAGTACACC 628 >seq44218 Length=785574 Score = 87.8 bits (96), Expect = 5e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 363837 AGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCT 363896 ||| || ||||||||||| || ||||| ||| || |||||||| || || ||||| Sbjct 784634 AGGAGCTTTTGCTATGTACCTGGAGCCCTGGCATTTTGACATTTTTGACTTCCTAGAGCT 784575 Query 363897 CCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGT 363956 || || || || ||||||||| ||| || | |||||||| ||||| || ||| | Sbjct 784574 TAAAAAGAATACTGGTAAAGAGGAACAGCGAGCTAGAGATCTGTTTTATGCCCTCTGGAT 784515 Query 363957 TTCTGACCATTTTATGAAGCGCGTGGAG 363984 |||| | || |||||||| |||||| Sbjct 784514 CCCTGATCTCTTCATGAAGCGAGTGGAG 784487 >seq37825 Length=627708 Score = 87.8 bits (96), Expect = 5e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 12822 TGTTGATCCAAATGTCAGAGAATCCATGTCTTCAGTTGCTGTGGCATACGCTTTTCCTGT 12881 ||| | ||||||||||||| |||||| ||||| |||||||||||||| | || |||| Sbjct 508399 TGTCGTTCCAAATGTCAGACCATCCATATCTTCTGTTGCTGTGGCATAAACCTTCCCTGA 508458 Query 12882 TTTTACATATGCAGCACATGTAGCTTCGGCCTCACATGGTGCTTGAAC 12929 ||| || |||||||| | || || ||||||||||| || | ||| Sbjct 508459 TTTCACCAGAGCAGCACAGCTCGCCTCCGCCTCACATGGAGCCTTAAC 508506 >seq14570 Length=4705 Score = 87.8 bits (96), Expect = 5e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 363837 AGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCT 363896 ||| || ||||||||||| || ||||| ||| || |||||||| || || ||||| Sbjct 768 AGGAGCTTTTGCTATGTACCTGGAGCCCTGGCATTTTGACATTTTTGACTTCCTAGAGCT 709 Query 363897 CCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGT 363956 || || || || ||||||||| ||| || | |||||||| ||||| || ||| | Sbjct 708 TAAAAAGAATACTGGTAAAGAGGAACAGCGAGCTAGAGATCTGTTTTATGCCCTCTGGAT 649 Query 363957 TTCTGACCATTTTATGAAGCGCGTGGAG 363984 |||| | || |||||||| |||||| Sbjct 648 CCCTGATCTCTTCATGAAGCGAGTGGAG 621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1300612039283286