Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq12251 95.1 1e-14 seq32410 91.5 1e-13 seq21577 86.0 5e-12 >seq12251 Length=2530766 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | ||||| || |||| ||| | || |||||| | | | Sbjct 1821345 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACGATCACCCTTGAGGTCGAGCCAAGC 1821404 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | ||||| ||| || |||||||||||||| || || || || Sbjct 1821405 GACACCATTGAGAACGTCAAGGCAAAAATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 1821464 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||| |||||| | ||||| || || ||||||| Sbjct 1821465 CAGAGGTTGATTTTTGCTGGCAAACAGCTGGAAGATG 1821501 >seq32410 Length=743546 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| |||||| | ||||| || | || ||| | || || ||| | | | Sbjct 171824 ATGCAGATCTTTGTCAAAACACTCACTGGTAAGACCATCACCCTTGAGGTTGAGCCAAGC 171883 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | ||||| |||| | |||||||||||||| || || || || Sbjct 171884 GACACCATTGAGAACGTCAAGGCAAAGGTCCAGGACAAAGAAGGCATTCCCCCTGACCAG 171943 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | | |||||| || || ||||||| | | | | || || ||| Sbjct 171944 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACTACAAC 172003 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || ||||| || || | ||| | ||| Sbjct 172004 ATCCAGAAAGAGTCCACCTTGCATCTTGTG 172033 >seq21577 Length=2421781 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || ||||||||||| | || || | ||||| ||| ||| Sbjct 24570 ATGCAGATCTTTGTCAAGACGCTAACTGGAAAAACAATCACTTTGGAAGTTGAGCCCAGT 24511 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | || || ||||| || || |||||||| ||||| || || Sbjct 24510 GACACCATTGAGAACGTGAAGGCCAAGATCCAAGATAAGGAAGGCATTCCTCCTGACCAG 24451 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||| | ||||| | || |||||||| || || |||| Sbjct 24450 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATG 24414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429075758926815