Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq21577 114 1e-20 seq8150 104 2e-17 seq32410 102 7e-17 seq12251 102 7e-17 >seq21577 Length=2421781 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| || | ||| || ||||||||||| || ||||||||||||| | Sbjct 24344 CCACCTCTCAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 24403 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| || ||||| || | || || ||||| ||||| ||| Sbjct 24404 AGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 24463 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || || || || || || |||||| | | | ||||| | |||||| Sbjct 24464 ATGCCTTCCTTATCTTGGATCTTGGC--CTTCACGTTCTCAATGGTGTCACTGGGCTCAA 24521 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||| |||||||| || ||||| |||||||| |||||||| Sbjct 24522 CTTCCAAAGTGATTGTTTTTCCAGTTAGCGTCTTGACAAAGATCTGCAT 24570 Score = 98.7 bits (108), Expect = 8e-16 Identities = 163/233 (70%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | |||||| ||||||||||| || ||||||||||||| | Sbjct 23888 CCCCCACGAAGACGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 23947 Query 16769 ATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCAC 16824 | || |||||| |||| || ||||| || | || || ||||| || || Sbjct 23948 AGCGT----GCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGG 24003 Query 16825 AGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGC 16882 ||| | ||| || ||||| || || || |||||| | | | ||||||| |||| Sbjct 24004 AGGAATGCCTTCCTTGTCCTGGATCTTGGC--CTTCACGTTCTCAATGGTGTCGCTGGGC 24061 Query 16883 TCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || | ||||||||| || || |||| || || ||||| |||||||| Sbjct 24062 TCAACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 24114 Score = 93.3 bits (102), Expect = 3e-14 Identities = 153/218 (70%), Gaps = 12/218 (6%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || ||||||||||| | || || |||||| Sbjct 24815 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGT----GCGTCC 24870 Query 16784 ----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTT 16839 |||| || ||||| ||| | || || ||||| ||||| ||| | ||| || || Sbjct 24871 ATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTT 24930 Query 16840 GTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTG 16897 ||| || || ||| || || | | | ||||||| |||||| || | |||| Sbjct 24931 GTCTTGGATTTTAGCT--TTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTG 24988 Query 16898 ATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| || || ||||| || ||||| || |||||||| Sbjct 24989 ATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 25026 >seq8150 Length=1005622 Score = 104 bits (114), Expect = 2e-17 Identities = 157/221 (71%), Gaps = 12/221 (5%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || ||||||||||||| || ||| |||||| Sbjct 148765 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT----GCGTCC 148820 Query 16784 ----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTT 16839 |||| || ||||| || | || || ||||| || || ||| | ||| || || Sbjct 148821 ATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTT 148880 Query 16840 GTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTG 16897 ||| || || ||| ||||| | | | ||||||| |||||| || | |||| Sbjct 148881 GTCTTGGATTTTAGCT--TTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTG 148938 Query 16898 ATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 ||||| || || |||||||| || ||||| |||||||| || Sbjct 148939 ATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTT 148979 >seq32410 Length=743546 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || | ||| || | ||||| |||||||| || || ||||||||||| | | Sbjct 172050 CCTCCCCTGAGACGCAGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 171991 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||| |||||||| ||| | || | || ||| ||||| || Sbjct 171990 AATGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGA 171931 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || ||||| ||| || | | | ||||||| ||||| Sbjct 171930 ATGCCTTCTTTGTCCTGGACCTTTGC--CTTGACGTTCTCAATGGTGTCGCTTGGCTCAA 171873 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || || || ||||||||||| |||||||| Sbjct 171872 CCTCAAGGGTGATGGTCTTACCAGTGAGTGTTTTGACAAAGATCTGCAT 171824 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || | ||| || | ||||| |||||||| || || ||||||||||| | | Sbjct 172278 CCTCCCCTGAGACGCAGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 172219 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||| |||||||| ||| | || | || ||| ||||| || Sbjct 172218 AGTGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGA 172159 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || ||||| ||| || | | | ||||||| ||||| Sbjct 172158 ATGCCTTCTTTGTCCTGGACCTTTGC--CTTGACGTTCTCAATGGTGTCGCTTGGCTCAA 172101 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || |||| || ||||| || |||||||| Sbjct 172100 CCTCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 172052 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || | || |||| ||||| |||||||| || || ||||||||||| | | Sbjct 172506 CCTCCCCTGAGACGCAACACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 172447 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||| |||||||| ||| | || | || ||| ||||| || Sbjct 172446 AATGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGA 172387 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || || ||| || | | | ||||||| ||||| Sbjct 172386 ATGCCTTCTTTGTCCTGGATCTTAGC--CTTGACGTTCTCAATTGTGTCGCTTGGCTCAA 172329 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || |||| || ||||| || |||||||| Sbjct 172328 CCTCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 172280 >seq12251 Length=2530766 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || | ||| |||| ||||| |||||||| || || ||||||||||| | | Sbjct 1821571 CCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 1821512 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | || |||| |||||||| ||| |||| | || ||| ||||| || Sbjct 1821511 AGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCAGGGGGA 1821452 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || ||||| ||| || | | | ||||||| ||||| Sbjct 1821451 ATGCCTTCTTTGTCCTGGATTTTTGC--CTTGACGTTCTCAATGGTGTCGCTTGGCTCGA 1821394 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||| || || || || || ||||||||||| |||||||| Sbjct 1821393 CCTCAAGGGTGATCGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 1821345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404277476257270