Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq18384 113 3e-20
seq7953 113 3e-20
seq9415 109 4e-19
seq21577 100 2e-16
seq6983 98.7 7e-16
seq34460 95.1 8e-15
seq4178 95.1 8e-15
seq1783 95.1 8e-15
seq32410 93.3 3e-14
seq23981 91.5 1e-13
>seq18384
Length=957298
Score = 113 bits (124), Expect = 3e-20
Identities = 71/77 (92%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 33725 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTGACTATCGGTCTCGT 33666
Query 20007 GGTAATATTTAGCCTTA 20023
| | ||||||||||||
Sbjct 33665 GCCAGTATTTAGCCTTA 33649
>seq7953
Length=6969
Score = 113 bits (124), Expect = 3e-20
Identities = 71/77 (92%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 5226 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTGACTATCGGTCTCGT 5285
Query 20007 GGTAATATTTAGCCTTA 20023
| | ||||||||||||
Sbjct 5286 GCCAGTATTTAGCCTTA 5302
>seq9415
Length=1591127
Score = 109 bits (120), Expect = 4e-19
Identities = 80/93 (86%), Gaps = 5/93 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||| |||||||||| ||||||||||| | || ||||| || ||||||||
Sbjct 656326 AAGCCCGTTCTCTTGGCTGTGCTTTCGCTAGATCGCAGGTAGGGACAGTGGGAATCTCGT 656267
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989
| |||| ||||||||||||||||||||||||||
Sbjct 656266 TCATCCATTCATGCGCGTCACTAATTAGATGAC 656234
>seq21577
Length=2421781
Score = 100 bits (110), Expect = 2e-16
Identities = 162/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
|||||||||||| ||||| || | ||| || ||| ||||| || || ||||||||||
Sbjct 25026 TACCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAG 25085
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
||| ||| | || || || || || || || || || || || || ||||| | |
Sbjct 25086 ACAGCGTGCGTCCATCTTCCAACTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAG 25145
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| |||||| ||||| ||||| |||||||||| | || || | ||||
Sbjct 25146 GGATGCCTTCCTTGTCTTGGATTTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCAA 25205
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321
| || | || || || || || |||| || ||||| || |||||||| |||
Sbjct 25206 CCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTTT 25258
Score = 93.3 bits (102), Expect = 3e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
|||||||||||| ||||| || | ||| || ||| ||| || || || ||||| || |
Sbjct 24570 TACCACCTCTCAGACGCAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGG 24629
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
||| | ||| | || || || ||||| ||||| || || | || || || || | |
Sbjct 24630 ACAGAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAG 24689
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
| | |||||| || || || || ||| || |||| | || || | ||| |
Sbjct 24690 GAATGCCTTCCTTATCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTTGGTTCCA 24749
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || | || || |||||||| |||||||| ||||| || ||||||||
Sbjct 24750 CCTCAAGAGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 24798
Score = 93.3 bits (102), Expect = 3e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
|||||||||||| ||| | ||||| || || ||| |||||| || || ||||| ||||
Sbjct 24798 TACCACCTCTCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 24857
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
||| | ||| | || || | || || |||||||| || || || || || || | |
Sbjct 24858 ACAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGAG 24917
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
| | |||||| ||||| ||||| || || |||| | || || | ||||
Sbjct 24918 GAATGCCTTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAA 24977
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || | || || || || || |||| ||| || ||||| ||||||||
Sbjct 24978 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 25026
>seq6983
Length=269374
Score = 98.7 bits (108), Expect = 7e-16
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 19952 TCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAA 20011
||||||||||||||||||||||||||||||| |||||||| |||||||||||| | |
Sbjct 84070 TCTTCAAAGTTCTTTTCAACTTTCCCTCACGATACTTGTTGACTATCGGTCTCGTGCCAG 84129
Query 20012 TATTTAGCCTTA 20023
||||||||||||
Sbjct 84130 TATTTAGCCTTA 84141
>seq34460
Length=469823
Score = 95.1 bits (104), Expect = 8e-15
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380
|| || || ||||| || || || | || |||||||| ||||||||| || || ||
Sbjct 119766 CCAACTAAGTATTTTGGCTGTGAGTTGGGGGCTCAGACTCAGTTTGATGCTAAGAATGAC 119825
Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440
|||| |||||| |||||||| ||| | | ||| ||||||||| | || || || ||
Sbjct 119826 CGCTACATCGTAAACGGATCCCATGAAGCCAACAAACTGCAGGACATGCTGGATGGATTC 119885
Query 6441 ATTCGCAAGTTTGTGCTGTG 6460
|| | |||||||||||||||
Sbjct 119886 ATCCACAAGTTTGTGCTGTG 119905
>seq4178
Length=1275533
Score = 95.1 bits (104), Expect = 8e-15
Identities = 121/167 (72%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380
|| || |||| || || || || | || || || || ||||||||| ||| || ||
Sbjct 544993 CCCACCAAATTCTTTGGTTGTGAGTTGGGAGCCCAAACCCAGTTTGATGGCAAGAATGAC 544934
Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440
|||| |||||| || ||||| ||| | | ||| ||||| ||| | || || || ||
Sbjct 544933 CGCTACATCGTCAATGGATCTCATGAAGCAAACAAACTGCAAGACATGCTAGATGGATTC 544874
Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487
|||||||||||||||||||||| || || || || || || || ||
Sbjct 544873 ATTCGCAAGTTTGTGCTGTGTCCTGAGTGTGACAATCCTGAAACTGA 544827
>seq1783
Length=1340164
Score = 95.1 bits (104), Expect = 8e-15
Identities = 121/167 (72%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380
|| || |||| || || || || | || || || || ||||||||| ||| || ||
Sbjct 787722 CCCACCAAATTCTTTGGTTGTGAGTTGGGAGCCCAAACCCAGTTTGATACCAAGAATGAC 787781
Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440
|||| |||||| || ||||| ||| | | ||||||||| ||| | || || || ||
Sbjct 787782 CGCTACATCGTCAATGGATCTCATGAGGCAAACAAGCTGCAAGACATGCTAGATGGATTC 787841
Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487
|||| ||||||||||||||||| || || || || || || || ||
Sbjct 787842 ATTCACAAGTTTGTGCTGTGTCCTGAGTGTGACAATCCTGAAACTGA 787888
>seq32410
Length=743546
Score = 93.3 bits (102), Expect = 3e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
||| || || | ||||||||||| ||| | ||| ||| || || || ||||| |||||
Sbjct 172507 ACCTCCCCTGAGACGCAACACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGA 172448
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
||| || | || || | ||||| |||||||| || | | || || || | |||
Sbjct 172447 CAATGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGG 172388
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
| ||||||||||||| || || ||| || |||| | || || | |||||
Sbjct 172387 AATGCCTTCTTTGTCCTGGATCTTAGCCTTGACGTTCTCAATTGTGTCGCTTGGCTCAAC 172328
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| | || || || || || |||||||| || ||||| |||||||||
Sbjct 172327 CTCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCATG 172279
>seq23981
Length=2758966
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380
|| || || ||||| || || || | || |||||||| ||||||||| ||| || ||
Sbjct 871140 CCAACTAAGTATTTTGGCTGTGAGTTGGGGGCTCAGACTCAGTTTGATGCCAAGAATGAC 871199
Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440
|||| ||| || |||||||| ||| | | ||| |||||||| | || || || ||
Sbjct 871200 CGCTACATTGTAAACGGATCCCATGAAGCCAACAAATTGCAGGACATGCTGGATGGATTC 871259
Query 6441 ATTCGCAAGTTTGTGCTGTG 6460
|| | |||||||||||||||
Sbjct 871260 ATCCACAAGTTTGTGCTGTG 871279
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334277018068763
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |