Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq18384 113 3e-20 seq7953 113 3e-20 seq9415 109 4e-19 seq21577 100 2e-16 seq6983 98.7 7e-16 seq34460 95.1 8e-15 seq4178 95.1 8e-15 seq1783 95.1 8e-15 seq32410 93.3 3e-14 seq23981 91.5 1e-13 >seq18384 Length=957298 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 33725 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTGACTATCGGTCTCGT 33666 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 33665 GCCAGTATTTAGCCTTA 33649 >seq7953 Length=6969 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 5226 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTGACTATCGGTCTCGT 5285 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 5286 GCCAGTATTTAGCCTTA 5302 >seq9415 Length=1591127 Score = 109 bits (120), Expect = 4e-19 Identities = 80/93 (86%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||| |||||||||| ||||||||||| | || ||||| || |||||||| Sbjct 656326 AAGCCCGTTCTCTTGGCTGTGCTTTCGCTAGATCGCAGGTAGGGACAGTGGGAATCTCGT 656267 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| |||||||||||||||||||||||||| Sbjct 656266 TCATCCATTCATGCGCGTCACTAATTAGATGAC 656234 >seq21577 Length=2421781 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||||| ||||| || | ||| || ||| ||||| || || |||||||||| Sbjct 25026 TACCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAG 25085 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| | || || || || || || || || || || || || ||||| | | Sbjct 25086 ACAGCGTGCGTCCATCTTCCAACTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAG 25145 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||| ||||| ||||| |||||||||| | || || | |||| Sbjct 25146 GGATGCCTTCCTTGTCTTGGATTTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCAA 25205 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 | || | || || || || || |||| || ||||| || |||||||| ||| Sbjct 25206 CCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTTT 25258 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||||| ||||| || | ||| || ||| ||| || || || ||||| || | Sbjct 24570 TACCACCTCTCAGACGCAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGG 24629 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| | ||| | || || || ||||| ||||| || || | || || || || | | Sbjct 24630 ACAGAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAG 24689 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| || || || || ||| || |||| | || || | ||| | Sbjct 24690 GAATGCCTTCCTTATCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTTGGTTCCA 24749 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || |||||||| |||||||| ||||| || |||||||| Sbjct 24750 CCTCAAGAGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 24798 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||||| ||| | ||||| || || ||| |||||| || || ||||| |||| Sbjct 24798 TACCACCTCTCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 24857 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| | ||| | || || | || || |||||||| || || || || || || | | Sbjct 24858 ACAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGAG 24917 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| ||||| ||||| || || |||| | || || | |||| Sbjct 24918 GAATGCCTTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAA 24977 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || |||| ||| || ||||| |||||||| Sbjct 24978 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 25026 >seq6983 Length=269374 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 19952 TCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAA 20011 ||||||||||||||||||||||||||||||| |||||||| |||||||||||| | | Sbjct 84070 TCTTCAAAGTTCTTTTCAACTTTCCCTCACGATACTTGTTGACTATCGGTCTCGTGCCAG 84129 Query 20012 TATTTAGCCTTA 20023 |||||||||||| Sbjct 84130 TATTTAGCCTTA 84141 >seq34460 Length=469823 Score = 95.1 bits (104), Expect = 8e-15 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || || ||||| || || || | || |||||||| ||||||||| || || || Sbjct 119766 CCAACTAAGTATTTTGGCTGTGAGTTGGGGGCTCAGACTCAGTTTGATGCTAAGAATGAC 119825 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 |||| |||||| |||||||| ||| | | ||| ||||||||| | || || || || Sbjct 119826 CGCTACATCGTAAACGGATCCCATGAAGCCAACAAACTGCAGGACATGCTGGATGGATTC 119885 Query 6441 ATTCGCAAGTTTGTGCTGTG 6460 || | ||||||||||||||| Sbjct 119886 ATCCACAAGTTTGTGCTGTG 119905 >seq4178 Length=1275533 Score = 95.1 bits (104), Expect = 8e-15 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || |||| || || || || | || || || || ||||||||| ||| || || Sbjct 544993 CCCACCAAATTCTTTGGTTGTGAGTTGGGAGCCCAAACCCAGTTTGATGGCAAGAATGAC 544934 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 |||| |||||| || ||||| ||| | | ||| ||||| ||| | || || || || Sbjct 544933 CGCTACATCGTCAATGGATCTCATGAAGCAAACAAACTGCAAGACATGCTAGATGGATTC 544874 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 |||||||||||||||||||||| || || || || || || || || Sbjct 544873 ATTCGCAAGTTTGTGCTGTGTCCTGAGTGTGACAATCCTGAAACTGA 544827 >seq1783 Length=1340164 Score = 95.1 bits (104), Expect = 8e-15 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || |||| || || || || | || || || || ||||||||| ||| || || Sbjct 787722 CCCACCAAATTCTTTGGTTGTGAGTTGGGAGCCCAAACCCAGTTTGATACCAAGAATGAC 787781 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 |||| |||||| || ||||| ||| | | ||||||||| ||| | || || || || Sbjct 787782 CGCTACATCGTCAATGGATCTCATGAGGCAAACAAGCTGCAAGACATGCTAGATGGATTC 787841 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 |||| ||||||||||||||||| || || || || || || || || Sbjct 787842 ATTCACAAGTTTGTGCTGTGTCCTGAGTGTGACAATCCTGAAACTGA 787888 >seq32410 Length=743546 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| || || | ||||||||||| ||| | ||| ||| || || || ||||| ||||| Sbjct 172507 ACCTCCCCTGAGACGCAACACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGA 172448 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 ||| || | || || | ||||| |||||||| || | | || || || | ||| Sbjct 172447 CAATGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGG 172388 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||||||||||| || || ||| || |||| | || || | ||||| Sbjct 172387 AATGCCTTCTTTGTCCTGGATCTTAGCCTTGACGTTCTCAATTGTGTCGCTTGGCTCAAC 172328 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || || |||||||| || ||||| ||||||||| Sbjct 172327 CTCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCATG 172279 >seq23981 Length=2758966 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || || ||||| || || || | || |||||||| ||||||||| ||| || || Sbjct 871140 CCAACTAAGTATTTTGGCTGTGAGTTGGGGGCTCAGACTCAGTTTGATGCCAAGAATGAC 871199 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 |||| ||| || |||||||| ||| | | ||| |||||||| | || || || || Sbjct 871200 CGCTACATTGTAAACGGATCCCATGAAGCCAACAAATTGCAGGACATGCTGGATGGATTC 871259 Query 6441 ATTCGCAAGTTTGTGCTGTG 6460 || | ||||||||||||||| Sbjct 871260 ATCCACAAGTTTGTGCTGTG 871279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334277018068763