Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq15552 122 1e-22 seq44218 118 1e-21 seq14570 118 1e-21 seq159452 102 1e-16 seq36865 102 1e-16 seq3015 96.9 4e-15 seq19765 84.2 3e-11 seq34520 82.4 1e-10 >seq15552 Length=1137653 Score = 122 bits (134), Expect = 1e-22 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||| ||||| ||||||||||| ||||| || || ||| |||||||| | ||| Sbjct 1132512 CTCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCT 1132453 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 |||||||| || || || ||||||||||| || ||||| | | ||| ||| ||||||| Sbjct 1132452 CTGTTCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCA 1132393 Query 63187 CGGTTCCAAGTATATGGCCATAACTCCAGG 63216 || |||| ||| ||||| | | |||| || Sbjct 1132392 GGGCTCCAGGTACATGGCAAAAGCTCCTGG 1132363 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| || || || ||||| || || |||||| ||| | || || || || ||||| | Sbjct 1137076 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCAATGTGGATGT 1137017 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 | | || || || || || ||||||||||| |||||||||||||| |||| || |||| Sbjct 1137016 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 1136957 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62085 |||| | || ||||| | || ||||| | | ||| | || ||||| Sbjct 1136956 TTTGCGAGATCTCCCACACGGTCTTATACAGTTCCTTCAGGTCATCTGG 1136908 >seq44218 Length=785574 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||| ||||| ||||||||||| ||||| || || ||| |||||||| | || Sbjct 784487 CTCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCATAAAACAGATCTCTAGCTCG 784546 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 |||||||| || || |||||||||||||| || ||||| | | ||| ||| ||||||| Sbjct 784547 CTGTTCCTCTTTACCAGTATTCTTTTTAAGCTCTAGGAAGTCAAAAATGTCAAAATGCCA 784606 Query 63187 CGGTTCCAAGTATATGGCCATAACTCCAGG 63216 || |||| ||| || || | | |||| || Sbjct 784607 GGGCTCCAGGTACATAGCAAAAGCTCCTGG 784636 Score = 86.0 bits (94), Expect = 8e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || ||||| || | ||||||||||||||||| ||||| || ||||| || |||||| Sbjct 785195 GTGCCGGCATTGAAGAGTGTAGGAGAAGCGTGAGTGAACCACTTCTCAGAGAGCAGATTG 785254 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || || || ||||||| | || ||| | ||| ||||| || | || | ||| | | Sbjct 785255 TAGGTTTCTATAGCTGCCGCAATGTCCTCCTTATGGATTCCCACGGACACTCTCATCAGC 785314 Query 63587 ATGTGCTGAGGTCTTTCAACGA 63608 ||||| || || | ||| ||| Sbjct 785315 ATGTGTTGTGGCCGCTCAGCGA 785336 >seq14570 Length=4705 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||| ||||| ||||||||||| ||||| || || ||| |||||||| | || Sbjct 621 CTCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCATAAAACAGATCTCTAGCTCG 680 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 |||||||| || || |||||||||||||| || ||||| | | ||| ||| ||||||| Sbjct 681 CTGTTCCTCTTTACCAGTATTCTTTTTAAGCTCTAGGAAGTCAAAAATGTCAAAATGCCA 740 Query 63187 CGGTTCCAAGTATATGGCCATAACTCCAGG 63216 || |||| ||| || || | | |||| || Sbjct 741 GGGCTCCAGGTACATAGCAAAAGCTCCTGG 770 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || ||||| || | ||||||||||||||||| ||||| || ||||| || |||||| Sbjct 1328 GTGCCGGCATTGAAGAGTGTAGGAGAAGCGTGAGTGAACCACTTCTCAGAGAGCAGATTG 1387 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || || || ||||||| | || ||| | ||| ||||| || | || | ||| | | Sbjct 1388 TAGGTTTCTATAGCTGCCGCAATGTCCTCCTTATGGATTCCCACGGACACTCTCATCAGC 1447 Query 63587 ATGTGCTGAGG 63597 ||||| || || Sbjct 1448 ATGTGTTGTGG 1458 >seq159452 Length=1242 Score = 102 bits (112), Expect = 1e-16 Identities = 126/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| || || || ||||| || || |||||| ||| | || || || || ||||| | Sbjct 578 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCGATGTGGATGT 519 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 | | || || || || || ||||||||||| |||||||||||||| |||| || |||| Sbjct 518 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 459 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 62085 |||| | || ||||| | ||| ||||| | ||| ||| | || ||||| Sbjct 458 TTTGAGAGATCTCCCACACAGTCTTATACAGCTC-CTTCAGGTCATCTGG 410 >seq36865 Length=2971667 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| || || | ||| ||||| | |||||||||||||| ||||| | || | Sbjct 1669565 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 1669506 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | | ||| | |||| |||||||||||||| ||||| || ||||| ||||| ||||| | Sbjct 1669505 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 1669446 Query 32803 CAATAAGTCTCTCTCC 32818 | | | || |||||| Sbjct 1669445 CTACTAATCGCTCTCC 1669430 Score = 91.5 bits (100), Expect = 2e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 33153 ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 33212 |||| ||| || || |||||||| ||||| |||| || | ||| ||||| ||||||||| Sbjct 1665715 ATATTCACCTCCTCAACTGTCCAGAATGAAGCCTGAGCTTGTTTGTACATTTTCCAGATG 1665656 Query 33213 TCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 33255 ||| ||| ||||| || ||||| ||||||| ||||| |||| Sbjct 1665655 TCAGAATACTGAATAGGGAAAATGACAAATCGCTTTGGGTTTT 1665613 >seq3015 Length=1951583 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| || || | ||| ||||| | |||||||||||||| ||||| | || | Sbjct 197199 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 197258 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | | ||| | |||| |||||||||||||| ||||| || ||||| ||||| ||||| | Sbjct 197259 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 197318 Query 32803 C 32803 | Sbjct 197319 C 197319 Score = 96.9 bits (106), Expect = 4e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 33153 ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 33212 |||| ||| || || |||||||| ||||| |||| || | ||| ||||| ||||||||| Sbjct 198212 ATATTCACCTCCTCAACTGTCCAGAATGAAGCCTGAGCTTGTTTGTACATTTTCCAGATG 198271 Query 33213 TCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 33255 ||| ||| ||||| |||||||| ||||||| ||||| |||| Sbjct 198272 TCAGAATACTGAATAGGAAAAATGACAAATCGCTTTGGGTTTT 198314 >seq19765 Length=1114994 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 33171 GTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGA 33230 ||||| || || ||||||||||| || ||||| | |||||||||||| || ||||||||| Sbjct 413419 GTCCAGAAGGAGGCCTCTGCCTTCTTGTACATCTGCCAGATGTCATGGTACTGAATTGGA 413360 Query 33231 AAAATAACAAA 33241 ||||| ||||| Sbjct 413359 AAAATGACAAA 413349 >seq34520 Length=2775569 Score = 82.4 bits (90), Expect = 1e-10 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||| | || || |||||||| ||||| |||||||| || || |||||||| ||||| Sbjct 504776 ATCTTTGATGTAGGTGTCAATCAACAGACTGTACATTTCAGAGTGGATGTTTTCCATGGC 504717 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTC 33025 || || || ||||||||||| | || || || | || ||||| Sbjct 504716 AATCTGGAAACCGTAGAAGCAGCGGGCTTCAGTCACTTGGACTTC 504672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632331684170800