Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq34520 87.8 2e-12 seq19765 87.8 2e-12 >seq34520 Length=2775569 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || || || |||||| ||||||||||| |||| || ||||| ||||| ||| Sbjct 504769 ATGTAGGTGTCAATCAACAGACTGTACATTTCAGAGTGGATGTTTTCCATGGCAATCTGG 504710 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTAC 93477 || |||||||| || | ||||| || | || ||||| |||| ||||| ||| || Sbjct 504709 AAACCGTAGAAGCAGCGGGCTTCAGTCACTTGGACTTCCTGAGTAAATCGCTCCAC 504654 >seq19765 Length=1114994 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || || || |||||| ||||||||||| |||| || ||||||||||| ||| Sbjct 413907 ATGTAGGTGTCAATCAACAGACTGTACATTTCAGAGTGGATGTTTTCCATTGCAATCTGG 413848 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTAC 93477 || |||||||| || | ||||| || | || || || |||| ||||| ||| || Sbjct 413847 AAACCGTAGAAGCAACGGGCTTCGGTCACTTGGACCTCCTGAGTAAATCGCTCCAC 413792 Score = 82.4 bits (90), Expect = 8e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 93603 CAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTG 93662 ||||||| || || || ||||| || |||||||| | ||| ||||| || || ||||||| Sbjct 413421 CAGTCCAGAAGGAGGCCTCTGCCTTCTTGTACATCTGCCAGATGTCATGGTACTGAATTG 413362 Query 93663 GAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 |||| |||||||| || | ||||| || || || | ||||| Sbjct 413361 GAAAAATGACAAAGCGGTGGGGGTTCTCCTTCAGAAGGGGCTC 413319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555718031148520