Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq21577 129 5e-25
seq8150 127 2e-24
seq32410 114 1e-20
seq15552 89.7 4e-13
>seq21577
Length=2421781
Score = 129 bits (142), Expect = 5e-25
Identities = 169/234 (72%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272
||||||||||| || ||||| || || | || || || || |||| || || || ||
Sbjct 25260 GTAAAGATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACCCTCGAGGTTGAG 25201
Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332
||| ||| ||| | || || | ||| ||||| ||||||||||| || || || ||
Sbjct 25200 CCCAGCGACACCATTGAGAATGTGAAAGCTAAAATCCAAGACAAGGAAGGCATCCCTCCT 25141
Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392
||||| || ||||| || || || ||||| ||||| || ||| ||||| | || |||
Sbjct 25140 GATCAGCAGCGTCTGATCTTCGCTGGCAAGCAGTTGGAAGATGGACGCACGCTGTCTGAT 25081
Query 22393 TACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|||||||| || || ||||||||| | ||| | || |||| || | || |||
Sbjct 25080 TACAACATCCAGAAGGAATCCACCCTCCATCTTGTCCTGCGTCTGAGAGGTGGT 25027
Score = 127 bits (140), Expect = 2e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || || || || |||||||| |||||||||| |||||| | |
Sbjct 24798 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAAACCATCACTCTTGAGGTGGAACCAAGT 24739
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || | |||| || || ||||| ||||| || ||||| || || ||
Sbjct 24738 GACACCATTGAGAACGTCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCTCCTGACCAG 24679
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||| | || || |||||||||||||| || ||| ||||| | ||||| ||||||
Sbjct 24678 CAGCGTTTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGCACTCTGTCCGACTACAAC 24619
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || ||||| ||||| | ||| | || |||| || | || |||
Sbjct 24618 ATCCAGAAAGAGTCCACACTCCATCTTGTCCTGCGTCTGAGAGGTGGT 24571
Score = 118 bits (130), Expect = 9e-22
Identities = 145/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || || | || || || || |||| ||||| || || ||| |
Sbjct 24342 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 24283
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || | ||||| ||||| ||||||||||| || ||||| || || ||
Sbjct 24282 GACACCATTGAGAACGTCAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 24223
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| || || || ||||| ||| | |||||| ||||| | || |||||||||
Sbjct 24222 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACGCTGTCTGATTACAAC 24163
Query 22399 ATTCAAAAAGAATCCACC 22416
|| || || |||||||||
Sbjct 24162 ATCCAGAAGGAATCCACC 24145
Score = 105 bits (116), Expect = 6e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | || || || || |||| || || || || ||| |
Sbjct 25026 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 24967
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || | ||||| ||||| ||||||||||| || ||||| || || ||
Sbjct 24966 GACACCATTGAGAACGTCAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 24907
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| || ||||||||||| ||| | || ||| ||||| | || || ||||||
Sbjct 24906 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACTCTGTCTGACTACAAC 24847
Query 22399 ATTCAAAAAGAATCCACC 22416
|| || || || ||||||
Sbjct 24846 ATCCAGAAGGAGTCCACC 24829
>seq8150
Length=1005622
Score = 127 bits (140), Expect = 2e-24
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272
||||||||||| || ||||| || || | || || || || |||| ||||| || ||
Sbjct 148982 GTAAAGATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACCCTTGAGGTTGAG 148923
Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332
||| ||| ||| | || || | ||| ||||| ||||||||||| || ||||| ||
Sbjct 148922 CCCAGCGACACCATTGAGAATGTGAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCT 148863
Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392
||||| || ||||| || || || ||||| ||| | || ||| |||||| | |||||
Sbjct 148862 GATCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGAC 148803
Query 22393 TACAACATTCAAAAAGAATCCAC 22415
|||||||| || || || |||||
Sbjct 148802 TACAACATCCAGAAGGAGTCCAC 148780
>seq32410
Length=743546
Score = 114 bits (126), Expect = 1e-20
Identities = 167/235 (71%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 22201 TTTTATACATTTGT--AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCA 22258
|||| | ||||||| | ||||||| || ||||| ||||| | || ||||| || |||
Sbjct 171804 TTTTCTTCATTTGTTTATAGATGCAGATCTTTGTCAAAACACTCACTGGTAAGACCATCA 171863
Query 22259 CTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGG 22318
| ||||| || || | | ||| ||| | || | |||| ||| | || ||||| |
Sbjct 171864 CCCTTGAGGTTGAGCCAAGCGACACCATTGAGAACGTCAAGGCAAAGGTCCAGGACAAAG 171923
Query 22319 AGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACC 22378
| || ||||| || || || || | | || ||||||||||||||| | || ||| ||
Sbjct 171924 AAGGCATTCCCCCTGACCAGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCC 171983
Query 22379 GCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433
|||| | || || |||||||| || ||||| |||||| | ||| | || ||||
Sbjct 171984 GCACATTGTCTGACTACAACATCCAGAAAGAGTCCACCTTGCATCTTGTGCTGCG 172038
Score = 98.7 bits (108), Expect = 8e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || || || || || || |||| ||||| || || | | |
Sbjct 172280 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 172339
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | || | |||| || || || ||||| || || ||||| || || ||
Sbjct 172340 GACACAATTGAGAACGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 172399
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | | || ||||||||||||||| | || ||| |||||| | || || ||||||
Sbjct 172400 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACTACAAC 172459
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTT 22447
|| || ||||| |||||| | ||| | || ||||| | | |||||||
Sbjct 172460 ATCCAGAAAGAGTCCACCTTGCATCTGGTGTTGCGTCTCAGGGGAGGTT 172508
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || || || || || || |||| ||||| || || | | |
Sbjct 172052 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 172111
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || | |||| ||| | || ||||| || || ||||| || || ||
Sbjct 172112 GACACCATTGAGAACGTCAAGGCAAAGGTCCAGGACAAAGAAGGCATTCCCCCTGACCAG 172171
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | | || ||||||||||||||| | || ||| |||||| | || || ||||||
Sbjct 172172 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACACTGTCTGACTACAAC 172231
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433
|| || ||||| |||||| | ||| | || ||||
Sbjct 172232 ATCCAGAAAGAGTCCACCTTGCATCTTGTGCTGCG 172266
>seq15552
Length=1137653
Score = 89.7 bits (98), Expect = 4e-13
Identities = 87/112 (78%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 129737 TGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGAT 129796
||||||| |||||||| | |||||| ||||| |||||||||||||| | || || |
Sbjct 1133831 TGTACTCTACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGGT 1133772
Query 129797 TACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTC 129848
| ||||| |||||| ||||| ||||| | |||||| || ||||| || ||
Sbjct 1133771 TGCTTTTGCGGTTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGCCGGTCTC 1133720
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 418888183689745
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |