Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq21577 129 5e-25 seq8150 127 2e-24 seq32410 114 1e-20 seq15552 89.7 4e-13 >seq21577 Length=2421781 Score = 129 bits (142), Expect = 5e-25 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 ||||||||||| || ||||| || || | || || || || |||| || || || || Sbjct 25260 GTAAAGATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACCCTCGAGGTTGAG 25201 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| ||| ||| | || || | ||| ||||| ||||||||||| || || || || Sbjct 25200 CCCAGCGACACCATTGAGAATGTGAAAGCTAAAATCCAAGACAAGGAAGGCATCCCTCCT 25141 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 ||||| || ||||| || || || ||||| ||||| || ||| ||||| | || ||| Sbjct 25140 GATCAGCAGCGTCTGATCTTCGCTGGCAAGCAGTTGGAAGATGGACGCACGCTGTCTGAT 25081 Query 22393 TACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || || ||||||||| | ||| | || |||| || | || ||| Sbjct 25080 TACAACATCCAGAAGGAATCCACCCTCCATCTTGTCCTGCGTCTGAGAGGTGGT 25027 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || |||||||| |||||||||| |||||| | | Sbjct 24798 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAAACCATCACTCTTGAGGTGGAACCAAGT 24739 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || ||||| ||||| || ||||| || || || Sbjct 24738 GACACCATTGAGAACGTCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCTCCTGACCAG 24679 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || |||||||||||||| || ||| ||||| | ||||| |||||| Sbjct 24678 CAGCGTTTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGCACTCTGTCCGACTACAAC 24619 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||| ||||| | ||| | || |||| || | || ||| Sbjct 24618 ATCCAGAAAGAGTCCACACTCCATCTTGTCCTGCGTCTGAGAGGTGGT 24571 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| ||||| || || ||| | Sbjct 24342 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 24283 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | ||||| ||||| ||||||||||| || ||||| || || || Sbjct 24282 GACACCATTGAGAACGTCAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 24223 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| | |||||| ||||| | || ||||||||| Sbjct 24222 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACGCTGTCTGATTACAAC 24163 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || ||||||||| Sbjct 24162 ATCCAGAAGGAATCCACC 24145 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || || || ||| | Sbjct 25026 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 24967 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | ||||| ||||| ||||||||||| || ||||| || || || Sbjct 24966 GACACCATTGAGAACGTCAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 24907 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||| ||| | || ||| ||||| | || || |||||| Sbjct 24906 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACTCTGTCTGACTACAAC 24847 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || |||||| Sbjct 24846 ATCCAGAAGGAGTCCACC 24829 >seq8150 Length=1005622 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 ||||||||||| || ||||| || || | || || || || |||| ||||| || || Sbjct 148982 GTAAAGATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACCCTTGAGGTTGAG 148923 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| ||| ||| | || || | ||| ||||| ||||||||||| || ||||| || Sbjct 148922 CCCAGCGACACCATTGAGAATGTGAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCT 148863 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 ||||| || ||||| || || || ||||| ||| | || ||| |||||| | ||||| Sbjct 148862 GATCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGAC 148803 Query 22393 TACAACATTCAAAAAGAATCCAC 22415 |||||||| || || || ||||| Sbjct 148802 TACAACATCCAGAAGGAGTCCAC 148780 >seq32410 Length=743546 Score = 114 bits (126), Expect = 1e-20 Identities = 167/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 22201 TTTTATACATTTGT--AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCA 22258 |||| | ||||||| | ||||||| || ||||| ||||| | || ||||| || ||| Sbjct 171804 TTTTCTTCATTTGTTTATAGATGCAGATCTTTGTCAAAACACTCACTGGTAAGACCATCA 171863 Query 22259 CTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGG 22318 | ||||| || || | | ||| ||| | || | |||| ||| | || ||||| | Sbjct 171864 CCCTTGAGGTTGAGCCAAGCGACACCATTGAGAACGTCAAGGCAAAGGTCCAGGACAAAG 171923 Query 22319 AGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACC 22378 | || ||||| || || || || | | || ||||||||||||||| | || ||| || Sbjct 171924 AAGGCATTCCCCCTGACCAGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCC 171983 Query 22379 GCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 |||| | || || |||||||| || ||||| |||||| | ||| | || |||| Sbjct 171984 GCACATTGTCTGACTACAACATCCAGAAAGAGTCCACCTTGCATCTTGTGCTGCG 172038 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || |||| ||||| || || | | | Sbjct 172280 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 172339 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || || || ||||| || || ||||| || || || Sbjct 172340 GACACAATTGAGAACGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 172399 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||||||||||||| | || ||| |||||| | || || |||||| Sbjct 172400 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACTACAAC 172459 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTT 22447 || || ||||| |||||| | ||| | || ||||| | | ||||||| Sbjct 172460 ATCCAGAAAGAGTCCACCTTGCATCTGGTGTTGCGTCTCAGGGGAGGTT 172508 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || |||| ||||| || || | | | Sbjct 172052 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 172111 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| ||| | || ||||| || || ||||| || || || Sbjct 172112 GACACCATTGAGAACGTCAAGGCAAAGGTCCAGGACAAAGAAGGCATTCCCCCTGACCAG 172171 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||||||||||||| | || ||| |||||| | || || |||||| Sbjct 172172 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACACTGTCTGACTACAAC 172231 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || ||||| |||||| | ||| | || |||| Sbjct 172232 ATCCAGAAAGAGTCCACCTTGCATCTTGTGCTGCG 172266 >seq15552 Length=1137653 Score = 89.7 bits (98), Expect = 4e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 129737 TGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGAT 129796 ||||||| |||||||| | |||||| ||||| |||||||||||||| | || || | Sbjct 1133831 TGTACTCTACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGGT 1133772 Query 129797 TACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTC 129848 | ||||| |||||| ||||| ||||| | |||||| || ||||| || || Sbjct 1133771 TGCTTTTGCGGTTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGCCGGTCTC 1133720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418888183689745