Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq21577 168 1e-36 seq32410 161 2e-34 seq12251 158 2e-33 seq8150 156 8e-33 seq130830 98.7 2e-15 >seq21577 Length=2421781 Score = 168 bits (186), Expect = 1e-36 Identities = 163/208 (78%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || ||||||||||| |||||||| || ||||| || || | |||||||| | Sbjct 24591 CAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCCA 24650 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||| || |||||||| || | | || ||||| || |||||||||||||| ||||| | Sbjct 24651 ACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCTTGGA 24710 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| ||||||||| ||| |||||||| || ||| || || | ||||||||||| | Sbjct 24711 TCTTGGCCTTGACGTTCTCAATGGTGTCACTTGGTTCCACCTCAAGAGTGATGGTTTTAC 24770 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || | |||||| || || |||||||| Sbjct 24771 CAGTCAAGGTCTTCACAAAGATCTGCAT 24798 Score = 168 bits (186), Expect = 1e-36 Identities = 165/210 (79%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || |||||||| || |||||||| || || || || || | |||||||| Sbjct 24818 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCATCTTCC 24877 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| ||||| || || || | || ||||| || |||||||||||||||||||| Sbjct 24878 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGG 24937 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTT 68431 || || || |||||| ||| |||||||| ||| | || || || | ||||||||| || Sbjct 24938 ATTTTAGCTTTGACGTTCTCAATGGTGTC-GCTGGGCTCAACCTCGAGGGTGATGGTCTT 24996 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||||||||| |||||||| Sbjct 24997 GCCAGTCAGGGTCTTGACGAAGATCTGCAT 25026 Score = 165 bits (182), Expect = 1e-35 Identities = 179/235 (76%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287 |||||| || || ||||| |||| || | || || |||||||| || |||||||| || Sbjct 23881 TTAATTGCCCCCACGAAGACGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTA 23940 Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 ||||| || || | |||||||| | |||||| || ||||| || || | || || || Sbjct 23941 GTCGGACAGCGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATC 24000 Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-G 68406 || ||||||||||||||||| || ||||| ||||| ||| ||| |||||||| ||| | Sbjct 24001 AGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC-GCTGG 24059 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || | ||||||||| || || || | |||||| || || |||||||| Sbjct 24060 GCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 24114 Score = 163 bits (180), Expect = 5e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || |||||||| || |||||||| || ||||| || || | ||||| || | |||| Sbjct 24368 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCCTCCAGCTGC 24427 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || ||||| || || | || ||||| || |||||||||||||| ||||| ||||| Sbjct 24428 TTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCTTGGATCTTG 24487 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 ||||| ||| ||| |||||||| | || |||||||| ||||| |||||||| || Sbjct 24488 GCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAAAGTGATTGTTTTTCCAGTT 24547 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 || |||||||| || |||||||| Sbjct 24548 AGCGTCTTGACAAAGATCTGCAT 24570 Score = 156 bits (172), Expect = 8e-33 Identities = 162/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || ||||| || || |||||||| ||||| || || || | ||||| || Sbjct 24134 ACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATCCTCC 24193 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || ||||| || || | || ||||| || |||||||||||||||||||| Sbjct 24194 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGG 24253 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTT 68431 || || || |||||| ||| |||||||| ||| | || || || | ||||||||| || Sbjct 24254 ATTTTAGCTTTGACGTTCTCAATGGTGTC-GCTGGGCTCAACCTCAAGGGTGATGGTCTT 24312 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||| || || |||||||| Sbjct 24313 GCCAGTCAGGGTCTTCACAAAGATCTGCAT 24342 Score = 136 bits (150), Expect = 7e-27 Identities = 158/209 (76%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || ||||| || || |||||||| ||||| || || || | |||||||| | Sbjct 25047 CAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATCTTCCA 25106 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 ||||||| || ||||| || || | || || || || || ||||||||||||||||| | Sbjct 25107 ACTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGA 25166 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTT 68432 | || || || || ||| |||||||| ||| | || || || | ||||||||| || Sbjct 25167 TTTTAGCTTTCACATTCTCAATGGTGTC-GCTGGGCTCAACCTCGAGGGTGATGGTCTTG 25225 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || ||||| || || |||||||| Sbjct 25226 CCAGTCAGCGTCTTCACAAAGATCTGCAT 25254 >seq32410 Length=743546 Score = 161 bits (178), Expect = 2e-34 Identities = 154/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324 ||||||||||| |||||||| || || || ||||| | |||||||| | ||| || ||| Sbjct 172248 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGGCCATCTTCCAGCTGTTTGCCG 172189 Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 || || || | || || ||||| || ||||||||||| ||||| || | |||||||||| Sbjct 172188 GCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGACCTTTGCCTTG 172129 Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTC 68444 ||| ||| |||||||| || || || || | ||||||||| || || || | |||| Sbjct 172128 ACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTGCCTGTCAAGGTC 172069 Query 68445 TTGACGAATATCTGCAT 68461 |||||||| |||||||| Sbjct 172068 TTGACGAAGATCTGCAT 172052 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || ||||| |||| || | ||||||||||| |||||||| || || || Sbjct 172506 CCTCCCCTGAGACGCAACACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 172447 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| | |||||||| | ||| || ||||| || || | || || ||||| || ||| Sbjct 172446 AATGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGA 172387 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| ||||| || ||||| ||||||||| ||| || ||||| || || || Sbjct 172386 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACGTTCTCAATTGTGTCGCTTGGCTCAACC 172327 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || | |||||||||||| |||||||| Sbjct 172326 TCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 172280 Score = 152 bits (168), Expect = 9e-32 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324 ||||||||||| |||||||| || || || | ||| | |||||||| | ||| || ||| Sbjct 172020 GTGGACTCTTTCTGGATGTTGTAGTCAGACAATGTGCGGCCATCTTCCAGCTGTTTGCCG 171961 Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 || || || | || || ||||| || ||||||||||| ||||| || | |||||||||| Sbjct 171960 GCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGACCTTTGCCTTG 171901 Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTC 68444 ||| ||| |||||||| || || || || | ||||||||| || || ||||| || Sbjct 171900 ACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTACCAGTGAGTGTT 171841 Query 68445 TTGACGAATATCTGCAT 68461 ||||| || |||||||| Sbjct 171840 TTGACAAAGATCTGCAT 171824 >seq12251 Length=2530766 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || |||| |||| || | ||||||||||| |||||||| || || || Sbjct 1821571 CCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 1821512 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | |||||||| | ||| || || || || || | || || ||||| || ||| Sbjct 1821511 AGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCAGGGGGA 1821452 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| ||||| || || |||||||||||| ||| |||||||| || || || Sbjct 1821451 ATGCCTTCTTTGTCCTGGATTTTTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCGACC 1821392 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || || |||||||| ||||| || |||||||| Sbjct 1821391 TCAAGGGTGATCGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 1821345 >seq8150 Length=1005622 Score = 156 bits (172), Expect = 8e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | |||||| | |||| ||| || |||||||| || |||||||| || ||||| Sbjct 148750 CCTCCCCTAAGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 148809 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || ||||| || || | || || || || ||| Sbjct 148810 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGA 148869 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||||||||||||||| || || || || || ||| |||||||| ||| | || || Sbjct 148870 ATGCCTTCCTTGTCTTGGATTTTAGCTTTCACATTCTCAATGGTGTC-GCTGGGCTCAAC 148928 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || || ||||| || || |||||||| Sbjct 148929 CTCAAGGGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 148976 Score = 149 bits (164), Expect = 1e-30 Identities = 163/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287 |||||| || || ||||| |||| || | || || |||||||| || |||||||| || Sbjct 148471 TTAATTGCCGCCACGAAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTA 148530 Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 || ||||| || | |||||||| | |||||| || ||||| || || | || ||||| Sbjct 148531 GTCAGAGAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTC 148590 Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-G 68406 || ||||||||||||||||| || ||||| ||||||||| ||| |||||||| ||| | Sbjct 148591 AGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTC-GCTGG 148649 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || || || | || |||||| || || || || Sbjct 148650 GCTCAACCTCGAGGGGGATGGTCTTGCCAGTCAG 148683 >seq130830 Length=505 Score = 98.7 bits (108), Expect = 2e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 68343 TGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCT 68402 ||||| || ||||||||||| ||||| || ||||| |||||||| ||| |||||||| Sbjct 504 TGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCG 445 Query 68403 GCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || | ||||||||| || || ||||| || ||||| || |||||||| Sbjct 444 CTTGGCTCAACCTCAAGGGTGATGGTCTTACCAGTGAGTGTTTTGACAAAGATCTGCAT 386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 919731081071560