Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq21577 168 1e-36
seq32410 161 2e-34
seq12251 158 2e-33
seq8150 156 8e-33
seq130830 98.7 2e-15
>seq21577
Length=2421781
Score = 168 bits (186), Expect = 1e-36
Identities = 163/208 (78%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313
|||| || || ||||||||||| |||||||| || ||||| || || | |||||||| |
Sbjct 24591 CAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCCA 24650
Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373
|||| || |||||||| || | | || ||||| || |||||||||||||| ||||| |
Sbjct 24651 ACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCTTGGA 24710
Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433
|||| ||||||||| ||| |||||||| || ||| || || | ||||||||||| |
Sbjct 24711 TCTTGGCCTTGACGTTCTCAATGGTGTCACTTGGTTCCACCTCAAGAGTGATGGTTTTAC 24770
Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461
| || | |||||| || || ||||||||
Sbjct 24771 CAGTCAAGGTCTTCACAAAGATCTGCAT 24798
Score = 168 bits (186), Expect = 1e-36
Identities = 165/210 (79%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||| ||| || |||||||| || |||||||| || || || || || | ||||||||
Sbjct 24818 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCATCTTCC 24877
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
| |||||| ||||| || || || | || ||||| || ||||||||||||||||||||
Sbjct 24878 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGG 24937
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTT 68431
|| || || |||||| ||| |||||||| ||| | || || || | ||||||||| ||
Sbjct 24938 ATTTTAGCTTTGACGTTCTCAATGGTGTC-GCTGGGCTCAACCTCGAGGGTGATGGTCTT 24996
Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || |||||||||||||| ||||||||
Sbjct 24997 GCCAGTCAGGGTCTTGACGAAGATCTGCAT 25026
Score = 165 bits (182), Expect = 1e-35
Identities = 179/235 (76%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287
|||||| || || ||||| |||| || | || || |||||||| || |||||||| ||
Sbjct 23881 TTAATTGCCCCCACGAAGACGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTA 23940
Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347
||||| || || | |||||||| | |||||| || ||||| || || | || || ||
Sbjct 23941 GTCGGACAGCGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATC 24000
Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-G 68406
|| ||||||||||||||||| || ||||| ||||| ||| ||| |||||||| ||| |
Sbjct 24001 AGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC-GCTGG 24059
Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || || | ||||||||| || || || | |||||| || || ||||||||
Sbjct 24060 GCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 24114
Score = 163 bits (180), Expect = 5e-35
Identities = 158/203 (78%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318
|| || |||||||| || |||||||| || ||||| || || | ||||| || | ||||
Sbjct 24368 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCCTCCAGCTGC 24427
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| || ||||| || || | || ||||| || |||||||||||||| ||||| |||||
Sbjct 24428 TTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCTTGGATCTTG 24487
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438
||||| ||| ||| |||||||| | || |||||||| ||||| |||||||| ||
Sbjct 24488 GCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAAAGTGATTGTTTTTCCAGTT 24547
Query 68439 AGGGTCTTGACGAATATCTGCAT 68461
|| |||||||| || ||||||||
Sbjct 24548 AGCGTCTTGACAAAGATCTGCAT 24570
Score = 156 bits (172), Expect = 8e-33
Identities = 162/210 (77%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||| ||| || ||||| || || |||||||| ||||| || || || | ||||| ||
Sbjct 24134 ACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATCCTCC 24193
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
| |||||| || ||||| || || | || ||||| || ||||||||||||||||||||
Sbjct 24194 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGG 24253
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTT 68431
|| || || |||||| ||| |||||||| ||| | || || || | ||||||||| ||
Sbjct 24254 ATTTTAGCTTTGACGTTCTCAATGGTGTC-GCTGGGCTCAACCTCAAGGGTGATGGTCTT 24312
Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || |||||||| || || ||||||||
Sbjct 24313 GCCAGTCAGGGTCTTCACAAAGATCTGCAT 24342
Score = 136 bits (150), Expect = 7e-27
Identities = 158/209 (76%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313
|||| || || ||||| || || |||||||| ||||| || || || | |||||||| |
Sbjct 25047 CAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATCTTCCA 25106
Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373
||||||| || ||||| || || | || || || || || ||||||||||||||||| |
Sbjct 25107 ACTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGA 25166
Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTT 68432
| || || || || ||| |||||||| ||| | || || || | ||||||||| ||
Sbjct 25167 TTTTAGCTTTCACATTCTCAATGGTGTC-GCTGGGCTCAACCTCGAGGGTGATGGTCTTG 25225
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || || ||||| || || ||||||||
Sbjct 25226 CCAGTCAGCGTCTTCACAAAGATCTGCAT 25254
>seq32410
Length=743546
Score = 161 bits (178), Expect = 2e-34
Identities = 154/197 (78%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324
||||||||||| |||||||| || || || ||||| | |||||||| | ||| || |||
Sbjct 172248 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGGCCATCTTCCAGCTGTTTGCCG 172189
Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384
|| || || | || || ||||| || ||||||||||| ||||| || | ||||||||||
Sbjct 172188 GCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGACCTTTGCCTTG 172129
Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTC 68444
||| ||| |||||||| || || || || | ||||||||| || || || | ||||
Sbjct 172128 ACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTGCCTGTCAAGGTC 172069
Query 68445 TTGACGAATATCTGCAT 68461
|||||||| ||||||||
Sbjct 172068 TTGACGAAGATCTGCAT 172052
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| | || ||||| |||| || | ||||||||||| |||||||| || || ||
Sbjct 172506 CCTCCCCTGAGACGCAACACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 172447
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| ||| | |||||||| | ||| || ||||| || || | || || ||||| || |||
Sbjct 172446 AATGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGA 172387
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|||||||| ||||| || ||||| ||||||||| ||| || ||||| || || ||
Sbjct 172386 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACGTTCTCAATTGTGTCGCTTGGCTCAACC 172327
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| || || || | |||||||||||| ||||||||
Sbjct 172326 TCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 172280
Score = 152 bits (168), Expect = 9e-32
Identities = 152/197 (77%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324
||||||||||| |||||||| || || || | ||| | |||||||| | ||| || |||
Sbjct 172020 GTGGACTCTTTCTGGATGTTGTAGTCAGACAATGTGCGGCCATCTTCCAGCTGTTTGCCG 171961
Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384
|| || || | || || ||||| || ||||||||||| ||||| || | ||||||||||
Sbjct 171960 GCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGACCTTTGCCTTG 171901
Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTC 68444
||| ||| |||||||| || || || || | ||||||||| || || ||||| ||
Sbjct 171900 ACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTACCAGTGAGTGTT 171841
Query 68445 TTGACGAATATCTGCAT 68461
||||| || ||||||||
Sbjct 171840 TTGACAAAGATCTGCAT 171824
>seq12251
Length=2530766
Score = 158 bits (174), Expect = 2e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| | || |||| |||| || | ||||||||||| |||||||| || || ||
Sbjct 1821571 CCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 1821512
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
||||| | |||||||| | ||| || || || || || | || || ||||| || |||
Sbjct 1821511 AGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCAGGGGGA 1821452
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|||||||| ||||| || || |||||||||||| ||| |||||||| || || ||
Sbjct 1821451 ATGCCTTCTTTGTCCTGGATTTTTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCGACC 1821392
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||| || || || |||||||| ||||| || ||||||||
Sbjct 1821391 TCAAGGGTGATCGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 1821345
>seq8150
Length=1005622
Score = 156 bits (172), Expect = 8e-33
Identities = 173/228 (76%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| | |||||| | |||| ||| || |||||||| || |||||||| || |||||
Sbjct 148750 CCTCCCCTAAGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 148809
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| | |||||| || ||||| || || | || || || || |||
Sbjct 148810 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGA 148869
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413
||||||||||||||||| || || || || || ||| |||||||| ||| | || ||
Sbjct 148870 ATGCCTTCCTTGTCTTGGATTTTAGCTTTCACATTCTCAATGGTGTC-GCTGGGCTCAAC 148928
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| || || || || ||||| || || ||||||||
Sbjct 148929 CTCAAGGGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 148976
Score = 149 bits (164), Expect = 1e-30
Identities = 163/214 (76%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287
|||||| || || ||||| |||| || | || || |||||||| || |||||||| ||
Sbjct 148471 TTAATTGCCGCCACGAAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTA 148530
Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347
|| ||||| || | |||||||| | |||||| || ||||| || || | || |||||
Sbjct 148531 GTCAGAGAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTC 148590
Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-G 68406
|| ||||||||||||||||| || ||||| ||||||||| ||| |||||||| ||| |
Sbjct 148591 AGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTC-GCTGG 148649
Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440
|| || || | || |||||| || || || ||
Sbjct 148650 GCTCAACCTCGAGGGGGATGGTCTTGCCAGTCAG 148683
>seq130830
Length=505
Score = 98.7 bits (108), Expect = 2e-15
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 68343 TGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCT 68402
||||| || ||||||||||| ||||| || ||||| |||||||| ||| ||||||||
Sbjct 504 TGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCG 445
Query 68403 GCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || || || | ||||||||| || || ||||| || ||||| || ||||||||
Sbjct 444 CTTGGCTCAACCTCAAGGGTGATGGTCTTACCAGTGAGTGTTTTGACAAAGATCTGCAT 386
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 919731081071560
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