Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq21577 116 3e-21 seq8150 113 4e-20 seq12251 107 2e-18 seq32410 89.7 4e-13 >seq21577 Length=2421781 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || ||||||||||| || || || ||| || || || || ||| Sbjct 24146 GTGGATTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATCCTCCAGCTGCTTGCCA 24205 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| |||||||| ||||| |||||||||||||| ||||| || || ||| Sbjct 24206 GCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATTTTAGCTTTG 24265 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| ||| || || || | ||| | || ||||| ||||| || Sbjct 24266 ACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 24325 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 24326 TTCACAAAGATCTGCAT 24342 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | || || | ||| | || || || || || |||||||| ||| | Sbjct 23888 CCCCCACGAAGACGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 23947 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || || |||||| || || || |||||| |||| |||||||| || || |||||| Sbjct 23948 AGCGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGA 24007 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 |||||||| ||||| ||||| || | | |||| ||||||| ||| || || Sbjct 24008 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACC 24067 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || ||||| |||| || || ||||| |||||||| Sbjct 24068 TCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 24114 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || | || || | ||| | || ||||| || || ||||||||||| Sbjct 25025 ATACCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCA 25084 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| | || || |||||| |||| |||||||| || || ||| Sbjct 25085 GACAGCGTGCGTCCATCTTCCAACTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGA 25144 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| ||||| || || ||| | | |||| ||||||| ||| || Sbjct 25145 GGGATGCCTTCCTTGTCTTGGATTTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCA 25204 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| ||||| || || ||||| |||||||| Sbjct 25205 ACCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 25254 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || ||| || |||||| || || || || Sbjct 24830 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCATCTTCCAGCTGCTTGCCG 24889 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| |||||||| ||||| |||||||||||||| ||||| || || ||| Sbjct 24890 GCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATTTTAGCTTTG 24949 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| ||| || || || | ||| | || ||||| ||||| || Sbjct 24950 ACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 25009 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 25010 TTGACGAAGATCTGCAT 25026 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || | || || | ||| | || || || || || |||||||| ||| Sbjct 24341 ATACCACCTCTCAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 24400 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| || || || || |||||| |||| |||||||| ||||| ||| Sbjct 24401 GACAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGA 24460 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| || || ||||| || | | |||| |||||| ||| || Sbjct 24461 GGAATGCCTTCCTTATCTTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCA 24520 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||||| || || || || || ||||| |||||||| Sbjct 24521 ACTTCCAAAGTGATTGTTTTTCCAGTTAGCGTCTTGACAAAGATCTGCAT 24570 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || | || || | ||| | || || ||||| || |||||||| ||| Sbjct 24569 ATACCACCTCTCAGACGCAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCG 24628 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| || |||||| | ||||| || ||| |||| | |||||| ||||| ||| Sbjct 24629 GACAGAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGA 24688 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| || || ||||| || | | |||| |||||| | | ||| Sbjct 24689 GGAATGCCTTCCTTATCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTTGGTTCC 24748 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || |||| || || ||||| |||||||| Sbjct 24749 ACCTCAAGAGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 24798 >seq8150 Length=1005622 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || || |||||| || || || ||| Sbjct 148780 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCA 148839 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| |||||||| || || |||||||||||||| ||||| || || ||| Sbjct 148840 GCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGGATTTTAGCTTTC 148899 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| ||| || || || | ||| | || ||||| ||||| || Sbjct 148900 ACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGCGTC 148959 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 148960 TTCACAAAGATCTGCAT 148976 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 |||||||| || | || || | ||| | || || || || || |||||||| || Sbjct 148478 CCGCCACGAAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 148537 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || || |||||| || || ||||||||| |||| |||||||| ||||| |||||| Sbjct 148538 AGGGTGCGTCCATCTTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 148597 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 |||||||| ||||| ||||| || | | |||| ||||||| ||| || || Sbjct 148598 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACC 148657 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAG 114361 || | || | || ||||| ||||| Sbjct 148658 TCGAGGGGGATGGTCTTGCCAGTCAG 148683 >seq12251 Length=2530766 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| || || || ||| |||||| || ||||| ||| Sbjct 1821541 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGACCATCTTCCAGCTGTTTGCCA 1821482 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | || | | ||| ||||| || ||||||||||||||||| || ||| || Sbjct 1821481 GCAAAAATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATTTTTGCCTTG 1821422 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| | | ||||| || | ||| | ||| ||||| || || ||| Sbjct 1821421 ACGTTCTCAATGGTGTCGCTTGGCTCGACCTCAAGGGTGATCGTCTTGCCAGTGAGGGTT 1821362 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 1821361 TTGACAAAGATCTGCAT 1821345 >seq32410 Length=743546 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| || || || || |||||| || ||||| || Sbjct 172020 GTGGACTCTTTCTGGATGTTGTAGTCAGACAATGTGCGGCCATCTTCCAGCTGTTTGCCG 171961 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| || ||||||||||||||||| | |||| || Sbjct 171960 GCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGACCTTTGCCTTG 171901 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| | | || || || | ||| | || || || || || ||| Sbjct 171900 ACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTACCAGTGAGTGTT 171841 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 171840 TTGACAAAGATCTGCAT 171824 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| || || || || |||||| || ||||| || Sbjct 172248 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGGCCATCTTCCAGCTGTTTGCCG 172189 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| || ||||||||||||||||| | |||| || Sbjct 172188 GCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGACCTTTGCCTTG 172129 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| | | || || || | ||| | || ||||| |||| || Sbjct 172128 ACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTGCCTGTCAAGGTC 172069 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || || || ||||||||| || Sbjct 172068 TTGACGAAGATCTGCATGCCT 172048 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 ||| || | ||| | || || ||||| || |||||||| || || || || ||| Sbjct 172492 CAACACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAATGTGCGGCCATC 172433 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||| || ||||| || || |||| | | ||| ||||| || ||||||||||||||||| Sbjct 172432 TTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 172373 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 ||||| || | | |||| |||||| | | || || || | ||| | || Sbjct 172372 CTGGATCTTAGCCTTGACGTTCTCAATTGTGTCGCTTGGCTCAACCTCAAGGGTGATGGT 172313 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 ||||| |||| || || || || ||||||||| || Sbjct 172312 CTTGCCTGTCAAGGTCTTGACGAAGATCTGCATGCCT 172276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419293770540876