Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq21577 152 1e-31 seq8150 138 3e-27 seq32410 118 2e-21 seq12251 116 9e-21 >seq21577 Length=2421781 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| ||| || ||||| || || || | ||||||||||| ||| Sbjct 25043 AGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATCT 25102 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || || || || || ||||||||||||||||| ||| | ||||| ||||| || || Sbjct 25103 TCCAACTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTCT 25162 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 |||||||| |||||||| || || || | ||||| | || || ||||| ||||| ||| Sbjct 25163 TGGATTTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTC 25222 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || || |||||||| Sbjct 25223 TTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 25254 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || |||||||| | ||| || || ||||| || ||||||| ||||||||||| ||| Sbjct 23903 AGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCT 23962 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || || ||||||||||||||||| ||| | || || ||||| || ||| Sbjct 23963 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCC 24022 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || || |||||||| || || | ||||| | || || || || ||||| ||| Sbjct 24023 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTC 24082 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || |||| ||||| || || |||||||| Sbjct 24083 TTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 24114 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || |||||||| ||||| | || || || || ||| Sbjct 24836 TCCTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAG 24895 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || | || || ||||| || || |||||||| ||||| ||||| Sbjct 24896 ATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATTTTAGCTTTGACGTTC 24955 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||||| | || || ||||| ||||| ||||| || ||||| ||||||||| Sbjct 24956 TCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACG 25015 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 25016 AAGATCTGCAT 25026 Score = 125 bits (138), Expect = 2e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || || || | ||||||||||| || || | || || || ||||| Sbjct 24151 TTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAA 24210 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||||||||| || | || || ||||| || || |||||||| ||||| ||||| Sbjct 24211 GATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATTTTAGCTTTGACGTT 24270 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||||| | || || || || ||||| ||||| || ||||| ||||| || Sbjct 24271 CTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 24330 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 24331 AAAGATCTGCAT 24342 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || |||||||| | ||| || || ||||| || ||||||| || |||||||| || Sbjct 24359 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCC 24418 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || || ||||||||||||||||| || | || || ||||| ||||| Sbjct 24419 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCT 24478 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || || |||||||| || || | || || | || ||||| | ||||| || Sbjct 24479 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAAAGTGATTGTT 24538 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || |||||||| || |||||||| Sbjct 24539 TTTCCAGTTAGCGTCTTGACAAAGATCTGCAT 24570 >seq8150 Length=1005622 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || |||||||| ||||| | || || || |||||| Sbjct 148786 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAG 148845 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| ||| | || || ||||| || || |||||||| |||||||| || Sbjct 148846 ATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGGATTTTAGCTTTCACATTC 148905 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||||| | || || || || ||||| ||||| || ||||| ||||| || Sbjct 148906 TCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGCGTCTTCACA 148965 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 148966 AAGATCTGCAT 148976 Score = 116 bits (128), Expect = 9e-21 Identities = 144/196 (73%), Gaps = 1/196 (1%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || |||||||| | ||| || || ||||| || ||||| | ||| |||||||| ||| Sbjct 148493 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATCT 148552 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || || ||||||||||||||||| || | || || ||||| || ||| Sbjct 148553 TCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 148612 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || || || ||||| || || | ||||| | || || ||||| | ||| ||| Sbjct 148613 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGGGATGGTC 148672 Query 288442 TTCCCGGTCAG-AGTC 288456 || || ||||| |||| Sbjct 148673 TTGCCAGTCAGCAGTC 148688 >seq32410 Length=743546 Score = 118 bits (130), Expect = 2e-21 Identities = 166/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || | ||| | || || ||||| | ||| ||||| ||||| || |||| Sbjct 172282 CATG-CCTCCCCTGAGACGCAGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGT 172224 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||| || ||||| | ||||| || || ||||||| | ||| || | Sbjct 172223 CAGACAGTGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAG 172164 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || |||||||| ||||||| || || || ||||| || || | ||||| | | Sbjct 172163 GGGGAATGCCTTCTTTGTCCTGGACCTTTGCCTTGACGTTCTCAATGGTGTCGCTTGGCT 172104 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || ||||| ||||| || |||| ||||||||||| |||||||| Sbjct 172103 CAACCTCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 172052 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 288265 ACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCT 288324 || ||||| | ||| ||||| ||||| || ||||| | | ||||| || ||||| Sbjct 172488 ACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAATGTGCGGCCATCTTCC 172429 Query 288325 AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGG 288384 | ||||| || || ||||||| | ||| || | || || |||||||| |||||| Sbjct 172428 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGG 172369 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 || || || || ||||| || || | ||||| | || || || || ||||| ||||| Sbjct 172368 ATCTTAGCCTTGACGTTCTCAATTGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTG 172309 Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||| ||||||||||| |||||||| Sbjct 172308 CCTGTCAAGGTCTTGACGAAGATCTGCAT 172280 >seq12251 Length=2530766 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| ||||| ||||| || ||||| | || ||||| || ||| Sbjct 1821556 AGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGACCATCT 1821497 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | ||||| || || || |||| | ||| || | || || |||||||| ||| Sbjct 1821496 TCCAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCC 1821437 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 |||||||| || || ||||| || || | ||||| | || || || || ||||||||| Sbjct 1821436 TGGATTTTTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCGACCTCAAGGGTGATCGTC 1821377 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| || |||||||| Sbjct 1821376 TTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 1821345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177173036414294