Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq21577 132 5e-26 seq32410 105 7e-18 seq8150 96.9 4e-15 seq10524 95.1 1e-14 seq33098 87.8 2e-12 seq15552 87.8 2e-12 seq13508 86.0 7e-12 seq11511 86.0 7e-12 seq9664 84.2 2e-11 seq39310 82.4 8e-11 seq19472 82.4 8e-11 >seq21577 Length=2421781 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | ||| | ||||| || | ||| ||||| || || |||||||||| Sbjct 24115 ACCACCTCTCAGACGGAGCACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGA 24174 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||| || || | || || |||||||| |||||||| || || ||||||||||| | || Sbjct 24175 CAGCGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGG 24234 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || |||||||| |||||| ||||| || | | |||||||| | || || Sbjct 24235 AATGCCTTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAAC 24294 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| ||||| || || ||||| |||||||| ||||| Sbjct 24295 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 24342 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | ||| | ||||| || | ||| |||||| || || ||||| |||| Sbjct 24799 ACCACCTCTCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 24858 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 |||||| || | || || |||||||| || || || || || ||||||||||| | || Sbjct 24859 CAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGAGG 24918 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || |||||||| |||||| ||||| || | | |||||||| | || || Sbjct 24919 AATGCCTTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAAC 24978 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| |||||||| ||||| || || ||||| || ||||| ||||| Sbjct 24979 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 25026 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | ||||| || | ||| | ||| |||||| || || ||||| || | Sbjct 24343 ACCACCTCTCAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 24402 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||| || || | || || |||||||| |||||||| || || ||||||||||| | || Sbjct 24403 CAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGG 24462 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || ||||| || ||| || || | || | | ||||| || | || || Sbjct 24463 AATGCCTTCCTTATCTTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAAC 24522 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||| ||||| || ||||||||||| |||||||| ||||| Sbjct 24523 TTCCAAAGTGATTGTTTTTCCAGTTAGCGTCTTGACAAAGATCTGCAT 24570 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | ||||| || | ||| | |||| ||| || || || ||||| || | Sbjct 24571 ACCACCTCTCAGACGCAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGA 24630 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 |||||| || | || || | ||| || || ||||| || | ||||||||||| | || Sbjct 24631 CAGAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGG 24690 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || ||||| || ||| || |||| || | | ||||| || | |||||| Sbjct 24691 AATGCCTTCCTTATCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTTGGTTCCAC 24750 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||||||||| || || | ||||| |||||||| ||||| Sbjct 24751 CTCAAGAGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 24798 >seq32410 Length=743546 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| || | ||||||||||| |||||| ||| ||| || || || ||||| |||| Sbjct 172507 ACCTCCCCTGAGACGCAACACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGA 172448 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || ||||| || || || || || | | ||||||||| | || Sbjct 172447 CAATGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGG 172388 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || || |||||| ||| || |||| || | | |||||||| | || || Sbjct 172387 AATGCCTTCTTTGTCCTGGATCTTAGCCTTGACGTTCTCAATTGTGTCGCTTGGCTCAAC 172328 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| ||||| || | ||||| || ||||| ||||| Sbjct 172327 CTCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 172280 >seq8150 Length=1005622 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| || | ||| | ||| |||||| || || ||||| |||| || || || | Sbjct 148489 ACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCC 148548 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || ||||||||||||||||| || || ||||||||||| | || | || ||||| Sbjct 148549 ATCTTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTT 148608 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 |||| ||| || |||| || | | |||||||| | || || |||| | ||| Sbjct 148609 GTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGGGAT 148668 Query 42173 GGTTTTGCCCGTTAGC 42188 ||| ||||| || ||| Sbjct 148669 GGTCTTGCCAGTCAGC 148684 >seq10524 Length=674422 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 |||||||| || | | |||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 646630 TTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACC 646571 Query 57063 ACTATACTACCGAGGATTGA 57082 ||||||||| |||||| ||| Sbjct 646570 ACTATACTAACGAGGAGTGA 646551 >seq33098 Length=1871098 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 56997 GAAAAAT----TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGA 57052 ||||||| ||||||| || | | |||||||||| ||||| |||||||||||||||| Sbjct 985775 GAAAAATGTTATTTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGA 985716 Query 57053 CATACTCACCACTATACTACCGAGGA 57078 ||||| ||||||||||| |||||| Sbjct 985715 GATACTGTCCACTATACTAACGAGGA 985690 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||| Sbjct 985020 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCAC 985079 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 985080 TATACTAACGAGGA 985093 >seq15552 Length=1137653 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 891212 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 891153 Query 57066 ATACTACCGAGGATTG 57081 |||||| |||||| || Sbjct 891152 ATACTAACGAGGAGTG 891137 >seq13508 Length=1361331 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| || | | |||||||||| ||||| |||||||||||||||| ||||| ||| Sbjct 23404 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCA 23463 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 23464 CTATACTAACGAGGA 23478 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| || | | |||||||||| ||||| |||||||||||||||| ||||| ||| Sbjct 23661 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCA 23602 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 23601 CTATACTAACGAGGA 23587 >seq11511 Length=777362 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| || | | |||||||||| ||||| |||||||||||||||| ||||| ||| Sbjct 130343 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCA 130402 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 130403 CTATACTAACGAGGA 130417 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| || | | |||||||||| ||||| |||||||||||||||| ||||| ||| Sbjct 130594 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCA 130535 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 130534 CTATACTAACGAGGA 130520 >seq9664 Length=668519 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 379739 TTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCA 379798 Query 57064 CTATACTACCGAGGATTGA 57082 |||||||| |||||| ||| Sbjct 379799 CTATACTAACGAGGAGTGA 379817 >seq39310 Length=904 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 255 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 196 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 195 ATACTAACGAGGA 183 >seq19472 Length=3177 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| || | | |||||||||| ||||| ||| |||||||||||| ||||| ||| Sbjct 1196 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGTGTGACAGGCGGAGATACTGTCCA 1137 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 1136 CTATACTAACGAGGA 1122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542098039062320