Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq21577 120 3e-22 seq8150 113 4e-20 seq15552 89.7 5e-13 >seq21577 Length=2421781 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || |||||||| || | | ||||| | ||| Sbjct 24815 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCATCT 24874 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| | || || ||||||||||| |||||||| ||||| || ||| Sbjct 24875 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 24934 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | |||| ||||| || ||| | || || | || || || || | || | ||| Sbjct 24935 TGGA-TTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGT 24993 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| |||| || || ||||| || ||||| Sbjct 24994 CTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 25026 Score = 111 bits (122), Expect = 2e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || ||||| || || ||||||||||| | | ||||| | || Sbjct 24131 AGCACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATCC 24190 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || || ||||||||||| |||||||| ||||| || ||| Sbjct 24191 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 24250 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | |||| ||||| || ||| | || || | || || || || | || | ||| Sbjct 24251 TGGA-TTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGT 24309 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| |||| || || || || || ||||| Sbjct 24310 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 24342 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || ||||| || || ||||||||||| | | ||||| | ||| Sbjct 25043 AGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATCT 25102 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||||||| || | || || |||||||| || ||||| || ||||| || ||| Sbjct 25103 TCCAACTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTCT 25162 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | |||| ||||| ||| ||| | || || | || || || || | || | ||| Sbjct 25163 TGGA-TTTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGT 25221 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| |||| || || || || || ||||| || Sbjct 25222 CTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTT 25257 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || ||||| || |||||||| || | | ||||| | ||| Sbjct 24587 AGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCT 24646 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||| |||||||| | || | ||||||||||| |||||||| ||||| || ||| Sbjct 24647 TCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCT 24706 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || |||| | ||||| || | ||| | ||| Sbjct 24707 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTTGGTTCCACCTCAAGAGTGATGGTT 24766 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || ||||| || || || || || ||||| Sbjct 24767 TTACCAGTCAAGGTCTTCACAAAGATCTGCAT 24798 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || || |||||||| || | | ||||| | ||| Sbjct 23903 AGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCT 23962 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || || |||||||| || |||||||| ||||| || || Sbjct 23963 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCC 24022 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || || | || || || || | || | |||| Sbjct 24023 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTC 24082 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| ||||| || || || || || ||||| Sbjct 24083 TTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 24114 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || || |||||||| || | | |||||| | || Sbjct 24359 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCC 24418 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || || ||||||||||| |||||||| ||||| || ||| Sbjct 24419 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCT 24478 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || |||| || || ||||| | ||| | || Sbjct 24479 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAAAGTGATTGTT 24538 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | || || || || || ||||| Sbjct 24539 TTTCCAGTTAGCGTCTTGACAAAGATCTGCAT 24570 >seq8150 Length=1005622 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || |||||||| || | | |||||| | ||| Sbjct 148765 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 148824 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || || |||||||| || |||||||| ||||| || ||| Sbjct 148825 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCT 148884 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | |||| ||||| ||| ||| | || || | || || || || | || | ||| Sbjct 148885 TGGA-TTTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGT 148943 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| |||| || || || || || ||||| || Sbjct 148944 CTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTT 148979 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || || |||||||| || | || |||||| | ||| Sbjct 148493 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATCT 148552 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || || | || || ||||||||||| |||||||| ||||| || || Sbjct 148553 TCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 148612 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || || | || || || || | | | |||| Sbjct 148613 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGGGATGGTC 148672 Query 64412 TTGCCGGTCA 64421 ||||| |||| Sbjct 148673 TTGCCAGTCA 148682 >seq15552 Length=1137653 Score = 89.7 bits (98), Expect = 5e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 154624 TGTATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGAT 154683 |||| | |||||||||| |||||| ||||||||| ||||||||||||||| | ||| | Sbjct 1133831 TGTACTCTACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGGT 1133772 Query 154684 TCGATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTC 154735 | |||| |||||| || || ||||| | ||||| || ||||| || || Sbjct 1133771 TGCTTTTGCGGTTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGCCGGTCTC 1133720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498619447678120