Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq21577 113 4e-20
seq8150 98.7 1e-15
seq32410 93.3 4e-14
seq12251 93.3 4e-14
seq34520 91.5 1e-13
seq19765 91.5 1e-13
seq15552 89.7 5e-13
>seq21577
Length=2421781
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| |||| || ||| | || | || | | | |||||||| || ||||||||||| |
Sbjct 24800 CCACCTCTCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 24859
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || || || || || || |||| | |||| |||||||| ||||| |||||
Sbjct 24860 AGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGAGGA 24919
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| ||||| ||||| |||||| ||| | | || | ||||||| | | ||| |||
Sbjct 24920 ATGCCTTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAACC 24979
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| || | || || |||||||| || || || || ||||||||
Sbjct 24980 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 25026
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| |||| || ||||| || | ||| | | | |||||||| || |||||||||||| |
Sbjct 24344 CCACCTCTCAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 24403
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||||| || || || || | |||| |||||||| ||||| |||||
Sbjct 24404 AGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 24463
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| ||||| || || ||| || || | | || | |||||| | | ||| ||
Sbjct 24464 ATGCCTTCCTTATCTTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACT 24523
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | ||||| ||||| || || || ||||| ||||||||
Sbjct 24524 TCCAAAGTGATTGTTTTTCCAGTTAGCGTCTTGACAAAGATCTGCAT 24570
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| |||| || ||||| || | ||| | | ||||| || || |||||||||||| |
Sbjct 24572 CCACCTCTCAGACGCAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGAC 24631
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || || || | ||||| |||| |||| | |||||| ||||| |||||
Sbjct 24632 AGAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGA 24691
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| ||||| || || ||| || || | | || | |||||| | | ||||||
Sbjct 24692 ATGCCTTCCTTATCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTTGGTTCCACC 24751
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | ||||||||||||| || || ||||| ||||||||
Sbjct 24752 TCAAGAGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 24798
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || || | ||||| || | ||| | | | |||||||| || ||||||||||||
Sbjct 23887 GCCCCCACGAAGACGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 23946
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| || || || || || || || || | |||| |||||||| || || |||||
Sbjct 23947 CAGCGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGG 24006
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| ||||| ||||| ||| || || | | || | ||||||| | | ||| ||
Sbjct 24007 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAAC 24066
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | || | || || ||||||| || || ||||| ||||||||
Sbjct 24067 CTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 24114
>seq8150
Length=1005622
Score = 98.7 bits (108), Expect = 1e-15
Identities = 138/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||| || || || || || || || || || |
Sbjct 148783 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCG 148842
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| |||||||| || || ||||| || ||||| ||||| |||||| ||| |
Sbjct 148843 AAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGGATTTTAGCTTTCACA 148902
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | ||||||| | | ||| ||||| | || | || || |||||||| || ||
Sbjct 148903 TTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGCGTCTTC 148962
Query 138601 ACAAAAATCTGCAT 138614
||||| ||||||||
Sbjct 148963 ACAAAGATCTGCAT 148976
>seq32410
Length=743546
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 138399 ACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA 138458
||||| || | ||| | | | ||||| || || ||||||||||| || || ||
Sbjct 172039 ACGCAGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAATGTGCGGCC 171980
Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518
|| || || ||||| |||| | |||| | | ||| ||||| || || || ||||||||
Sbjct 171979 ATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTT 171920
Query 138519 GTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578
||| || ||| || | | || | ||||||| | | ||| ||||| | || |
Sbjct 171919 GTCCTGGACCTTTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGAT 171860
Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| |||||||| || ||||| ||||| ||||||||
Sbjct 171859 GGTCTTACCAGTGAGTGTTTTGACAAAGATCTGCAT 171824
>seq12251
Length=2530766
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 138399 ACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA 138458
||||| || | ||| | | | ||||| || || ||||||||||| || || ||
Sbjct 1821560 ACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGACC 1821501
Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518
|| || || ||||| || | | | || | | ||| ||||| || || || ||||||||
Sbjct 1821500 ATCTTCCAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTT 1821441
Query 138519 GTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578
||| ||||||| || | | || | ||||||| | | ||| ||||| | || |
Sbjct 1821440 GTCCTGGATTTTTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCGACCTCAAGGGTGAT 1821381
Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| || ||||| || ||||| ||||| ||||||||
Sbjct 1821380 CGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 1821345
>seq34520
Length=2775569
Score = 91.5 bits (100), Expect = 1e-13
Identities = 68/80 (85%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 52764 AATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAG 52823
||||| ||||| || ||| | |||||||| | ||||||||||||||||| || ||||||
Sbjct 506003 AATCCTTTTGACTTCATGGAGAACATTTCCTTGGAGGGCAAGACCAACTTCTTTGAGAAG 506062
Query 52824 CGAGTCGGCGAGTATAAGCG 52843
|||||||||||||| ||||
Sbjct 506063 CGAGTCGGCGAGTACCAGCG 506082
>seq19765
Length=1114994
Score = 91.5 bits (100), Expect = 1e-13
Identities = 68/80 (85%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 52764 AATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAG 52823
||||| ||||| || ||| | |||||||| | ||||||||||||||||| || ||||||
Sbjct 415120 AATCCTTTTGACTTCATGGAGAACATTTCCTTGGAGGGCAAGACCAACTTCTTTGAGAAG 415179
Query 52824 CGAGTCGGCGAGTATAAGCG 52843
|||||||||||||| ||||
Sbjct 415180 CGAGTCGGCGAGTACCAGCG 415199
>seq15552
Length=1137653
Score = 89.7 bits (98), Expect = 5e-13
Identities = 87/112 (78%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699
|||||| || || || | ||| | ||| |||||||| ||| ||||| || ||||| |
Sbjct 1133831 TGTACTCTACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGGT 1133772
Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 153751
|||||||||| ||||| || || ||| | |||||||| ||| |||||||||
Sbjct 1133771 TGCTTTTGCGGTTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGCCGGTCTC 1133720
Score = 82.4 bits (90), Expect = 8e-11
Identities = 74/93 (80%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 153659 GCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGC 153718
||| | ||| |||||||| ||| ||||| || ||||| ||||||||||| ||||| ||
Sbjct 1133700 GCACAAGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGGTTGCTTTTGCGGTTGCAGGC 1133641
Query 153719 GTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 153751
|| ||| | |||||||| ||| |||||||||
Sbjct 1133640 ATCCTTGTAAAGCATGTAGGGTGTGCCGGTCTC 1133608
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495243988912560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |