Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq12251 116 3e-21 seq21577 93.3 4e-14 seq32410 86.0 6e-12 >seq12251 Length=2530766 Score = 116 bits (128), Expect = 3e-21 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| | ||| | || ||| ||||||| || || || || ||||| || || || | Sbjct 1821571 CCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCA--G 1821514 Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || || | || ||| |||| ||||| || || | ||||| | |||||||| || | Sbjct 1821513 ACAGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCAGGGG 1821454 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCG 45290 ||||||||||||| || || |||||| |||| || | || | ||||||| | |||| Sbjct 1821453 GAATGCCTTCTTTGTCCTGGATTTTTGCCTTGA-CGTTCTCAATGGTGTCGCTTGGCTCG 1821395 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || | ||| ||||| || || ||||| ||||| || |||||| Sbjct 1821394 ACCTCAAGGGTGATCGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCATC 1821344 >seq21577 Length=2421781 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCG 45188 ||| || || || || |||||||| ||||| || ||||| ||| | | | ||| Sbjct 24133 CACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCA--GACAGCGTGCGTCCATCC 24190 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 |||| || || || ||| | |||| || |||||||| || ||||||||||| || ||| Sbjct 24191 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 24250 Query 45249 TGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 || ||||| ||||| || | || | ||||||| | ||| || || || || | || Sbjct 24251 TGGATTTTAGCTTTGA-CGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGT 24309 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || || || ||||| || ||||| Sbjct 24310 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 24342 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || || ||||| ||||| || || ||| | ||| ||| ||| Sbjct 24362 ACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCCTCC 24421 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || ||| | |||| || |||||||| || ||||||||||| |||||||| Sbjct 24422 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCTTGG 24481 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || || | || | || | |||||| | ||| ||||| | ||| | ||||| Sbjct 24482 ATCTTGGCCTTCA-CGTTCTCAATGGTGTCACTGGGCTCAACTTCCAAAGTGATTGTTTT 24540 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || || ||||| || ||||| Sbjct 24541 TCCAGTTAGCGTCTTGACAAAGATCTGCAT 24570 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189 || ||||| || || || || || ||||| || || ||| ||| | | | ||| | Sbjct 24590 ACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCG--GACAGAGTGCGTCCATCTT 24647 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 |||| ||||| || ||| | ||||| || |||||||| || ||||||||||| ||||||| Sbjct 24648 CCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCTT 24707 Query 45250 GAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 | || || |||| || | || | |||||| | || || || ||||| | ||| Sbjct 24708 GGATCTTGGCCTTGA-CGTTCTCAATGGTGTCACTTGGTTCCACCTCAAGAGTGATGGTT 24766 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | || || ||||| || ||||| Sbjct 24767 TTACCAGTCAAGGTCTTCACAAAGATCTGCAT 24798 >seq32410 Length=743546 Score = 86.0 bits (94), Expect = 6e-12 Identities = 162/234 (69%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | || ||| ||||||| || || || || ||||| || || || Sbjct 172053 ATGCCTCCCCTGAGACGCAGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCA 171994 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | ||| |||| ||||| || || | ||||| | |||||||| | Sbjct 171993 --GACAATGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAG 171936 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 | |||||||||||||| || || | ||| |||| || | || | ||||||| | | Sbjct 171935 GGGGAATGCCTTCTTTGTCCTGGACCTTTGCCTTGA-CGTTCTCAATGGTGTCGCTTGGC 171877 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || || | || || || || || ||||| ||||| || |||||| Sbjct 171876 TCAACCTCAAGGGTGATGGTCTTACCAGTGAGTGTTTTGACAAAGATCTGCATC 171823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451075615983080