Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq12251 116 3e-21
seq21577 93.3 4e-14
seq32410 86.0 6e-12
>seq12251
Length=2530766
Score = 116 bits (128), Expect = 3e-21
Identities = 167/231 (72%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
||||| | ||| | || ||| ||||||| || || || || ||||| || || || |
Sbjct 1821571 CCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCA--G 1821514
Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231
|| || | || ||| |||| ||||| || || | ||||| | |||||||| || |
Sbjct 1821513 ACAGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCAGGGG 1821454
Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCG 45290
||||||||||||| || || |||||| |||| || | || | ||||||| | ||||
Sbjct 1821453 GAATGCCTTCTTTGTCCTGGATTTTTGCCTTGA-CGTTCTCAATGGTGTCGCTTGGCTCG 1821395
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| || || || | ||| ||||| || || ||||| ||||| || ||||||
Sbjct 1821394 ACCTCAAGGGTGATCGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCATC 1821344
>seq21577
Length=2421781
Score = 93.3 bits (102), Expect = 4e-14
Identities = 151/213 (71%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCG 45188
||| || || || || |||||||| ||||| || ||||| ||| | | | |||
Sbjct 24133 CACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCA--GACAGCGTGCGTCCATCC 24190
Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248
|||| || || || ||| | |||| || |||||||| || ||||||||||| || |||
Sbjct 24191 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 24250
Query 45249 TGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307
|| ||||| ||||| || | || | ||||||| | ||| || || || || | ||
Sbjct 24251 TGGATTTTAGCTTTGA-CGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGT 24309
Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| || || || || ||||| || |||||
Sbjct 24310 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 24342
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| ||||| || || || ||||| ||||| || || ||| | ||| ||| |||
Sbjct 24362 ACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCCTCC 24421
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| || || || ||| | |||| || |||||||| || ||||||||||| ||||||||
Sbjct 24422 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCTTGG 24481
Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310
|| || || | || | || | |||||| | ||| ||||| | ||| | |||||
Sbjct 24482 ATCTTGGCCTTCA-CGTTCTCAATGGTGTCACTGGGCTCAACTTCCAAAGTGATTGTTTT 24540
Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| ||||| || || ||||| || |||||
Sbjct 24541 TCCAGTTAGCGTCTTGACAAAGATCTGCAT 24570
Score = 86.0 bits (94), Expect = 6e-12
Identities = 149/212 (70%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189
|| ||||| || || || || || ||||| || || ||| ||| | | | ||| |
Sbjct 24590 ACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCG--GACAGAGTGCGTCCATCTT 24647
Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249
|||| ||||| || ||| | ||||| || |||||||| || ||||||||||| |||||||
Sbjct 24648 CCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCTT 24707
Query 45250 GAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308
| || || |||| || | || | |||||| | || || || ||||| | |||
Sbjct 24708 GGATCTTGGCCTTGA-CGTTCTCAATGGTGTCACTTGGTTCCACCTCAAGAGTGATGGTT 24766
Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || | || || ||||| || |||||
Sbjct 24767 TTACCAGTCAAGGTCTTCACAAAGATCTGCAT 24798
>seq32410
Length=743546
Score = 86.0 bits (94), Expect = 6e-12
Identities = 162/234 (69%), Gaps = 6/234 (3%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| ||||| | ||| | || ||| ||||||| || || || || ||||| || || ||
Sbjct 172053 ATGCCTCCCCTGAGACGCAGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCA 171994
Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228
||| | | | ||| |||| ||||| || || | ||||| | |||||||| |
Sbjct 171993 --GACAATGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAG 171936
Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287
| |||||||||||||| || || | ||| |||| || | || | ||||||| | |
Sbjct 171935 GGGGAATGCCTTCTTTGTCCTGGACCTTTGCCTTGA-CGTTCTCAATGGTGTCGCTTGGC 171877
Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| || || || || | || || || || || ||||| ||||| || ||||||
Sbjct 171876 TCAACCTCAAGGGTGATGGTCTTACCAGTGAGTGTTTTGACAAAGATCTGCATC 171823
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451075615983080
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