Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq35465 113 7e-20 seq32347 113 7e-20 seq38558 107 3e-18 seq33531 104 3e-17 seq43433 98.7 1e-15 seq41984 96.9 5e-15 >seq35465 Length=3269434 Score = 113 bits (124), Expect = 7e-20 Identities = 170/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9726 GATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAG 9785 ||| |||||||||||||| || | |||||| |||| || || || || || || | Sbjct 2902120 GATGAGACGAGTGGTTTGGAAGATTCTCTCGTCGTCCCAGTCGGGATGCTCTTGCTTCAT 2902061 Query 9786 AACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGG 9845 | ||| ||||| | |||||| || | ||||| |||| ||| |||||||| ||||| || Sbjct 2902060 GATATCACAGACGCGGTTGTGCTCACGAAGCCAAATGGAGGCATACATCATCAAACCTGG 2902001 Query 9846 CACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGC 9905 || | ||| || | |||| ||||| ||||| | | | || || || || | || | Sbjct 2902000 AACCAGACCGAAGGCCTCATGGCCCACAGCAAATCTCTGTTCCTCTGGGACGTGAGGAGG 2901941 Query 9906 ATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAAC 9965 ||| |||| | ||||||| || || || || ||||||| ||||| || | ||| Sbjct 2901940 ATAGTGCATCTCCACCTGGACATCCTTCACCAATGGAGGATACACCTCACCATCCACAAC 2901881 Query 9966 CT 9967 || Sbjct 2901880 CT 2901879 Score = 102 bits (112), Expect = 1e-16 Identities = 173/248 (70%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 9443 TCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATGGAATTGT 9502 ||||| | ||||| || || || | | | || ||||||| ||| | || || |||| Sbjct 2902491 TCTGTTTGGTGAAGGAATCCACCATGTTGCGGATGCCGTGCTGGATCAAAATAGAGTTGT 2902432 Query 9503 TGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCAGGCAACA 9562 | | || || || | || || || | ||| || |||| | ||||||| || Sbjct 2902431 TAAACACAAACTGGTGGTGGCCGTAGACCTGGTCCTGGATCTGAAAGTTGTCAGGCATCA 2902372 Query 9563 GAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAAGG 9622 ||| |||||| | || || || ||||| |||| || || ||||||||||||||||| | Sbjct 2902371 GAGGGTGCCAGTGATACAGAGTGTTGAATTCGGATGCGATGCGGTTCTGGTACTGAAA-G 2902313 Query 9623 CGGT-ACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGC 9681 || | | ||| || | ||| |||||||| | |||| ||||||||| || || | ||| Sbjct 2902312 CGCTCATTGAAGAGAAGCTCTGGGTCAAACTTGAGCTTGAAGTGGTAGCCACTCAAGTGC 2902253 Query 9682 TGGACATA 9689 || ||||| Sbjct 2902252 TGAACATA 2902245 >seq32347 Length=2478086 Score = 113 bits (124), Expect = 7e-20 Identities = 170/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9726 GATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAG 9785 ||| |||||||||||||| || | | |||||| |||| || || || || || || | Sbjct 1844030 GATGAGACGAGTGGTTTGGAAGATCCTCTCGTCGTCCCAGTCGGGATGCTCTTGCTTCAT 1843971 Query 9786 AACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGG 9845 | ||| ||||| | |||||| || | ||||| ||||| || |||||||| ||||| || Sbjct 1843970 GATATCACAGACACGGTTGTGCTCACGAAGCCAAATGGTAGCATACATCATCAAACCTGG 1843911 Query 9846 CACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGC 9905 || | ||| || || |||| ||||| || || | | | || || || | | || | Sbjct 1843910 AACCAGACCGAAGACCTCATGGCCCACAGCGAATCTCTGTTCTTCTGGGATATGAGGAGG 1843851 Query 9906 ATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAAC 9965 ||| |||| | ||||||| || || || || ||||||| ||||| || | ||| Sbjct 1843850 ATAGTGCATCTCCACCTGGACATCCTTTACCAACGGAGGATACACCTCACCATCCACAAC 1843791 Query 9966 CT 9967 || Sbjct 1843790 CT 1843789 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/146 (76%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 9545 GAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTC 9604 |||| | ||||||| ||||| |||||| | || || || ||||| |||| || || | Sbjct 1844295 GAAAGTTGTCAGGCATCAGAGGGTGCCAGTGATACAGAGTGTTGAATTCGGATGCGATGC 1844236 Query 9605 GGTTCTGGTACTGAAAGGCGGT-ACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAG 9663 |||||||||||||||| ||| | | ||| || | ||| |||||||| | |||| |||| Sbjct 1844235 GGTTCTGGTACTGAAA-GCGCTCATTGAAGAGAAGCTCTGGGTCAAACTTGAGCTTGAAG 1844177 Query 9664 TGGTACCCGCTGAGTTGCTGGACATA 9689 ||||| || || | ||||| ||||| Sbjct 1844176 TGGTAGCCACTCAAGTGCTGAACATA 1844151 >seq38558 Length=2776019 Score = 107 bits (118), Expect = 3e-18 Identities = 170/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || || || || || || || || | || || |||||||| |||||||||||| | Sbjct 2249700 GCAGTGTTGACAATCTCAAAGCCCACTTTGCCACCAAAGGTGCTCGGTTTCCAGTACTCA 2249759 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 ||||| |||||| || |||| || ||||| | ||| | || || |||| || | Sbjct 2249760 GGGGAACAGATGGGATTTCCCATAAGTCCTTTGAGGGAGTAGGGGGCACCCATTTCCACC 2249819 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 ||| |||| || |||||||| || | || || || || | |||||||| || || Sbjct 2249820 ATGGTCTCCCCAAAGATGGCGTTGGTCCTGGGCTTCTCAACCAGCAAGCCAGTATAAAGC 2249879 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || ||||| || || | || || | |||| | || ||||| |||||||| || ||| Sbjct 2249880 TCCACAGCATCCACATGTCCGTACAACTCTTCAAGTTCAGCAGCCATCTCCTTTTCTCCT 2249939 Query 9176 ACAA 9179 | || Sbjct 2249940 AAAA 2249943 >seq33531 Length=3659319 Score = 104 bits (114), Expect = 3e-17 Identities = 166/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 9722 TAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTT 9781 |||| || || | ||||| ||||||| |||||| || ||||| || ||||| |||| Sbjct 13636 TAATAATGAGCCTGGTGGTCTGAAACAGCTGCTCATCCCCCCAGGTAGGATGTTCTTGTT 13577 Query 9782 TGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAAC 9841 | || | ||| || || | |||||| || | |||||| | |||||||||||| | | || Sbjct 13576 TCAGGATATCACACACACGGTTGTGCTCACGCAGCCACAAGGTGGCGTACATACTGAGAC 13517 Query 9842 CCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGC-GCAGATCATCGGGCACTTCG 9900 |||||| | ||||||||||| || |||| || ||| || | || || || Sbjct 13516 CCGGCAGCAGGCCAAACACTTC-TTGCCCAATGGCCAGCTGCTGCTCCGGTGGGACAGAC 13458 Query 9901 GGCGCATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACC 9956 |||| || ||| | ||| | | ||| || |||||||||||||| ||||| Sbjct 13457 GGCGGGTAGCTCATTTTGACCGGTGCATCTAGCACTGTGGGGGGATACATCTCACC 13402 >seq43433 Length=1517348 Score = 98.7 bits (108), Expect = 1e-15 Identities = 168/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || || || || || || || || | || || |||||||| |||||||||||| | Sbjct 1336117 GCAGTATTGACAATCTCAAAGCCCACTTTGCCACCAAAGGTGCTTGGTTTCCAGTACTCG 1336058 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 ||||| |||||| || |||| || ||||| | ||| | || || |||| || | Sbjct 1336057 GGGGAACAGATGGGATTTCCCATAAGTCCTTTGAGGGAGTAGGGGGCACCCATTTCCACC 1335998 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 ||| |||| || |||||||| || | || || || || | | |||| || || Sbjct 1335997 ATGGTCTCCCCAAAGATGGCGTTGGTCCTGGGCTTCTCAACCAGCAGCCCAGCATAAAGC 1335938 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || ||||| || || || || || | |||| | || ||||| |||||||| || ||| Sbjct 1335937 TCCACAGCATCCACATCCCCGTACATCTCTTCAAGTTCAGCAGCCATCTCCTTTTCTCCT 1335878 Query 9176 ACAA 9179 | || Sbjct 1335877 AAAA 1335874 >seq41984 Length=1574288 Score = 96.9 bits (106), Expect = 5e-15 Identities = 114/153 (75%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 9722 TAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTT 9781 |||| || || | ||||| ||||||| |||||| || ||||| || ||||| |||| Sbjct 1305155 TAATAATGAGCCTGGTGGTCTGAAACAGCTGCTCATCCCCCCAGGTTGGATGTTCTTGTT 1305096 Query 9782 TGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAAC 9841 | || | ||| || || | |||||| || | |||||| | ||||||||||| | | || Sbjct 1305095 TCAGGATATCACACACACGGTTGTGCTCACGCAGCCACAAGGTGGCGTACAAACTGAGAC 1305036 Query 9842 CCGGCACTAAACCAAACACTTCATTCCCCACTG 9874 |||||| | ||||||||||| || |||| || Sbjct 1305035 CCGGCAGCAGTCCAAACACTTC-TTGCCCAATG 1305004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 722242792538200