Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq35465 113 7e-20
seq32347 113 7e-20
seq38558 107 3e-18
seq33531 104 3e-17
seq43433 98.7 1e-15
seq41984 96.9 5e-15
>seq35465
Length=3269434
Score = 113 bits (124), Expect = 7e-20
Identities = 170/242 (70%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 9726 GATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAG 9785
||| |||||||||||||| || | |||||| |||| || || || || || || |
Sbjct 2902120 GATGAGACGAGTGGTTTGGAAGATTCTCTCGTCGTCCCAGTCGGGATGCTCTTGCTTCAT 2902061
Query 9786 AACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGG 9845
| ||| ||||| | |||||| || | ||||| |||| ||| |||||||| ||||| ||
Sbjct 2902060 GATATCACAGACGCGGTTGTGCTCACGAAGCCAAATGGAGGCATACATCATCAAACCTGG 2902001
Query 9846 CACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGC 9905
|| | ||| || | |||| ||||| ||||| | | | || || || || | || |
Sbjct 2902000 AACCAGACCGAAGGCCTCATGGCCCACAGCAAATCTCTGTTCCTCTGGGACGTGAGGAGG 2901941
Query 9906 ATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAAC 9965
||| |||| | ||||||| || || || || ||||||| ||||| || | |||
Sbjct 2901940 ATAGTGCATCTCCACCTGGACATCCTTCACCAATGGAGGATACACCTCACCATCCACAAC 2901881
Query 9966 CT 9967
||
Sbjct 2901880 CT 2901879
Score = 102 bits (112), Expect = 1e-16
Identities = 173/248 (70%), Gaps = 2/248 (1%)
Strand=Plus/Minus
Query 9443 TCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATGGAATTGT 9502
||||| | ||||| || || || | | | || ||||||| ||| | || || ||||
Sbjct 2902491 TCTGTTTGGTGAAGGAATCCACCATGTTGCGGATGCCGTGCTGGATCAAAATAGAGTTGT 2902432
Query 9503 TGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCAGGCAACA 9562
| | || || || | || || || | ||| || |||| | ||||||| ||
Sbjct 2902431 TAAACACAAACTGGTGGTGGCCGTAGACCTGGTCCTGGATCTGAAAGTTGTCAGGCATCA 2902372
Query 9563 GAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAAGG 9622
||| |||||| | || || || ||||| |||| || || ||||||||||||||||| |
Sbjct 2902371 GAGGGTGCCAGTGATACAGAGTGTTGAATTCGGATGCGATGCGGTTCTGGTACTGAAA-G 2902313
Query 9623 CGGT-ACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGC 9681
|| | | ||| || | ||| |||||||| | |||| ||||||||| || || | |||
Sbjct 2902312 CGCTCATTGAAGAGAAGCTCTGGGTCAAACTTGAGCTTGAAGTGGTAGCCACTCAAGTGC 2902253
Query 9682 TGGACATA 9689
|| |||||
Sbjct 2902252 TGAACATA 2902245
>seq32347
Length=2478086
Score = 113 bits (124), Expect = 7e-20
Identities = 170/242 (70%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 9726 GATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAG 9785
||| |||||||||||||| || | | |||||| |||| || || || || || || |
Sbjct 1844030 GATGAGACGAGTGGTTTGGAAGATCCTCTCGTCGTCCCAGTCGGGATGCTCTTGCTTCAT 1843971
Query 9786 AACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGG 9845
| ||| ||||| | |||||| || | ||||| ||||| || |||||||| ||||| ||
Sbjct 1843970 GATATCACAGACACGGTTGTGCTCACGAAGCCAAATGGTAGCATACATCATCAAACCTGG 1843911
Query 9846 CACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGC 9905
|| | ||| || || |||| ||||| || || | | | || || || | | || |
Sbjct 1843910 AACCAGACCGAAGACCTCATGGCCCACAGCGAATCTCTGTTCTTCTGGGATATGAGGAGG 1843851
Query 9906 ATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAAC 9965
||| |||| | ||||||| || || || || ||||||| ||||| || | |||
Sbjct 1843850 ATAGTGCATCTCCACCTGGACATCCTTTACCAACGGAGGATACACCTCACCATCCACAAC 1843791
Query 9966 CT 9967
||
Sbjct 1843790 CT 1843789
Score = 98.7 bits (108), Expect = 1e-15
Identities = 111/146 (76%), Gaps = 2/146 (1%)
Strand=Plus/Minus
Query 9545 GAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTC 9604
|||| | ||||||| ||||| |||||| | || || || ||||| |||| || || |
Sbjct 1844295 GAAAGTTGTCAGGCATCAGAGGGTGCCAGTGATACAGAGTGTTGAATTCGGATGCGATGC 1844236
Query 9605 GGTTCTGGTACTGAAAGGCGGT-ACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAG 9663
|||||||||||||||| ||| | | ||| || | ||| |||||||| | |||| ||||
Sbjct 1844235 GGTTCTGGTACTGAAA-GCGCTCATTGAAGAGAAGCTCTGGGTCAAACTTGAGCTTGAAG 1844177
Query 9664 TGGTACCCGCTGAGTTGCTGGACATA 9689
||||| || || | ||||| |||||
Sbjct 1844176 TGGTAGCCACTCAAGTGCTGAACATA 1844151
>seq38558
Length=2776019
Score = 107 bits (118), Expect = 3e-18
Identities = 170/244 (70%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995
|| || || || || || || || || | || || |||||||| |||||||||||| |
Sbjct 2249700 GCAGTGTTGACAATCTCAAAGCCCACTTTGCCACCAAAGGTGCTCGGTTTCCAGTACTCA 2249759
Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055
||||| |||||| || |||| || ||||| | ||| | || || |||| || |
Sbjct 2249760 GGGGAACAGATGGGATTTCCCATAAGTCCTTTGAGGGAGTAGGGGGCACCCATTTCCACC 2249819
Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115
||| |||| || |||||||| || | || || || || | |||||||| || ||
Sbjct 2249820 ATGGTCTCCCCAAAGATGGCGTTGGTCCTGGGCTTCTCAACCAGCAAGCCAGTATAAAGC 2249879
Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
|| ||||| || || | || || | |||| | || ||||| |||||||| || |||
Sbjct 2249880 TCCACAGCATCCACATGTCCGTACAACTCTTCAAGTTCAGCAGCCATCTCCTTTTCTCCT 2249939
Query 9176 ACAA 9179
| ||
Sbjct 2249940 AAAA 2249943
>seq33531
Length=3659319
Score = 104 bits (114), Expect = 3e-17
Identities = 166/236 (70%), Gaps = 2/236 (1%)
Strand=Plus/Minus
Query 9722 TAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTT 9781
|||| || || | ||||| ||||||| |||||| || ||||| || ||||| ||||
Sbjct 13636 TAATAATGAGCCTGGTGGTCTGAAACAGCTGCTCATCCCCCCAGGTAGGATGTTCTTGTT 13577
Query 9782 TGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAAC 9841
| || | ||| || || | |||||| || | |||||| | |||||||||||| | | ||
Sbjct 13576 TCAGGATATCACACACACGGTTGTGCTCACGCAGCCACAAGGTGGCGTACATACTGAGAC 13517
Query 9842 CCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGC-GCAGATCATCGGGCACTTCG 9900
|||||| | ||||||||||| || |||| || ||| || | || || ||
Sbjct 13516 CCGGCAGCAGGCCAAACACTTC-TTGCCCAATGGCCAGCTGCTGCTCCGGTGGGACAGAC 13458
Query 9901 GGCGCATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACC 9956
|||| || ||| | ||| | | ||| || |||||||||||||| |||||
Sbjct 13457 GGCGGGTAGCTCATTTTGACCGGTGCATCTAGCACTGTGGGGGGATACATCTCACC 13402
>seq43433
Length=1517348
Score = 98.7 bits (108), Expect = 1e-15
Identities = 168/244 (69%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995
|| || || || || || || || || | || || |||||||| |||||||||||| |
Sbjct 1336117 GCAGTATTGACAATCTCAAAGCCCACTTTGCCACCAAAGGTGCTTGGTTTCCAGTACTCG 1336058
Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055
||||| |||||| || |||| || ||||| | ||| | || || |||| || |
Sbjct 1336057 GGGGAACAGATGGGATTTCCCATAAGTCCTTTGAGGGAGTAGGGGGCACCCATTTCCACC 1335998
Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115
||| |||| || |||||||| || | || || || || | | |||| || ||
Sbjct 1335997 ATGGTCTCCCCAAAGATGGCGTTGGTCCTGGGCTTCTCAACCAGCAGCCCAGCATAAAGC 1335938
Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
|| ||||| || || || || || | |||| | || ||||| |||||||| || |||
Sbjct 1335937 TCCACAGCATCCACATCCCCGTACATCTCTTCAAGTTCAGCAGCCATCTCCTTTTCTCCT 1335878
Query 9176 ACAA 9179
| ||
Sbjct 1335877 AAAA 1335874
>seq41984
Length=1574288
Score = 96.9 bits (106), Expect = 5e-15
Identities = 114/153 (75%), Gaps = 1/153 (1%)
Strand=Plus/Minus
Query 9722 TAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTT 9781
|||| || || | ||||| ||||||| |||||| || ||||| || ||||| ||||
Sbjct 1305155 TAATAATGAGCCTGGTGGTCTGAAACAGCTGCTCATCCCCCCAGGTTGGATGTTCTTGTT 1305096
Query 9782 TGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAAC 9841
| || | ||| || || | |||||| || | |||||| | ||||||||||| | | ||
Sbjct 1305095 TCAGGATATCACACACACGGTTGTGCTCACGCAGCCACAAGGTGGCGTACAAACTGAGAC 1305036
Query 9842 CCGGCACTAAACCAAACACTTCATTCCCCACTG 9874
|||||| | ||||||||||| || |||| ||
Sbjct 1305035 CCGGCAGCAGTCCAAACACTTC-TTGCCCAATG 1305004
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 722242792538200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |