Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq15552 93.3 5e-14
seq147642 89.7 6e-13
seq159452 86.0 8e-12
seq36865 84.2 3e-11
seq3015 84.2 3e-11
seq19765 82.4 9e-11
>seq15552
Length=1137653
Score = 93.3 bits (102), Expect = 5e-14
Identities = 105/138 (76%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 116460 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCC 116519
|||||||||| |||||||||| |||||| || ||||| || | |||||||||||
Sbjct 1133845 CTCATCCTTACTGGTGTACTCTACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCC 1133786
Query 116520 CAAGTTCTTTTGATTTGACTTTGTG-TTACACGCATCCTTGTAGAGCATATATGGCGTCC 116578
|| ||||| || || | |||| | || || ||||||||||| ||||| || || || |
Sbjct 1133785 CAGGTTCTGCTGGTT-GCTTTTGCGGTTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGC 1133727
Query 116579 CCGTCTCCGTTTGGGACT 116596
| ||||| || || ||||
Sbjct 1133726 CGGTCTCTGTCTGAGACT 1133709
Score = 82.4 bits (90), Expect = 9e-11
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962
||||||||| | || || ||||| | |||||||||| |||| ||| || || ||||||
Sbjct 1136580 TAGATGTTGCTAGTATACGGCTCGATTGACTCATTGTTGCCCAGGATCTGAGCAGTGGAG 1136521
Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCG 115997
|| ||||||||||| |||| || || ||||| ||
Sbjct 1136520 GCAGTGGGCATGGGAGCCAGCAGCAGACTGTTACG 1136486
>seq147642
Length=763
Score = 89.7 bits (98), Expect = 6e-13
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 116460 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCC 116519
|||||||||| |||||||||| ||| || || ||||| || | || ||||||||
Sbjct 616 CTCATCCTTACTGGTGTACTCTACAATCTCTGTGCACAAGTTACTGCATTTGATGGTGCC 675
Query 116520 CAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCC 116579
|| ||||| || || ||| ||| || ||||||||||||||||| || || || ||
Sbjct 676 CAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGTAGGGTGTGCC 735
Query 116580 CGTCTCCGTTTGGGACT 116596
||||| || || ||||
Sbjct 736 GGTCTCTGTCTGAGACT 752
>seq159452
Length=1242
Score = 86.0 bits (94), Expect = 8e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962
||||||||| | ||||||||||| | |||||||||| |||| ||| || || ||||||
Sbjct 111 TAGATGTTGCTAGTGTATGGCTCGATTGACTCATTGTTTCCCAGGATCTGAGCAGTGGAG 52
Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCG 115997
|| |||||||| || |||| || || ||||| ||
Sbjct 51 GCAGTGGGCATAGGAGCCAGCAGCAGACTGTTACG 17
>seq36865
Length=2971667
Score = 84.2 bits (92), Expect = 3e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598
|||| || | | |||||||||||| ||| || || || ||||| || || | ||||
Sbjct 1669565 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 1669506
Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647
|||||||| | || ||| |||||| |||||||||||||| || |||||
Sbjct 1669505 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCAC 1669457
>seq3015
Length=1951583
Score = 84.2 bits (92), Expect = 3e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598
|||| || | | |||||||||||| ||| || || || ||||| || || | ||||
Sbjct 197199 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 197258
Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647
|||||||| | || ||| |||||| |||||||||||||| || |||||
Sbjct 197259 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCAC 197307
>seq19765
Length=1114994
Score = 82.4 bits (90), Expect = 9e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598
|||| || | | ||| |||||||| |||||| || || |||||||| || | |||||
Sbjct 414477 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 414418
Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 127648
| ||||||||||| | | ||| || ||| | |||||||| || ||||||
Sbjct 414417 TTAACCAGAAAATAGAAGCAAAAGACCCAAAAAAGAAGATTCCTTCCACA 414368
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 612248183530680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |