Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq15552 109 9e-19 seq159452 102 1e-16 >seq15552 Length=1137653 Score = 109 bits (120), Expect = 9e-19 Identities = 117/152 (77%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| || || | ||||||| | |||||||| |||||| || || |||| Sbjct 1137082 CCTGCTTCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCAATGT 1137023 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATA 204028 | ||||| || |||||||| ||||| ||||| ||| || | ||||| ||||| || | Sbjct 1137022 GGATGTTGAGGGACTGGCTCTGGTCAATGAA-GGCTCCTCTGTCTGCAGCCATCTTTAAG 1136964 Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 |||||||| ||||| ||||||||||| ||||| Sbjct 1136963 ATGGTCTTTTGCGAGATCTCCCACACGGTCTT 1136932 Score = 89.7 bits (98), Expect = 8e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 |||||| ||||| ||||| || | || ||| | | |||| | || | || |||| | Sbjct 1136611 CTGAAACTCTCCAGACAGAACTCTGCGTGTGTAGATGTTGCTAGTATACGGCTCGATTGA 1136552 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 ||| |||||||| | |||||||| ||| ||| ||||||||||||||||| ||||| Sbjct 1136551 CTCATTGTTGCCCAGGATCTGAGCAGTGGAGGCAGTGGGCATGGGAGCCAGCAGCAGACT 1136492 Query 204316 GTTGCGCACACC 204327 ||| ||||| || Sbjct 1136491 GTTACGCACTCC 1136480 >seq159452 Length=1242 Score = 102 bits (112), Expect = 1e-16 Identities = 113/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973 || ||| || || | ||||||| | |||||||| |||||| || || ||||| || Sbjct 580 CTTCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCGATGTGGAT 521 Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGG 204032 ||| || |||||||| ||||| ||||| ||| || | ||||| ||||| || | |||| Sbjct 520 GTTGAGGGACTGGCTCTGGTCAATGAA-GGCTCCTCTGTCTGCAGCCATCTTTAAGATGG 462 Query 204033 TCTTCTGCGAAATCTCCCACACCGTCTT 204060 |||| || || ||||||||||| ||||| Sbjct 461 TCTTTTGAGAGATCTCCCACACAGTCTT 434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793523412316880