Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq15552 109 9e-19
seq159452 102 1e-16
>seq15552
Length=1137653
Score = 109 bits (120), Expect = 9e-19
Identities = 117/152 (77%), Gaps = 2/152 (1%)
Strand=Plus/Minus
Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969
||| || ||| || || | ||||||| | |||||||| |||||| || || ||||
Sbjct 1137082 CCTGCTTCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCAATGT 1137023
Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATA 204028
| ||||| || |||||||| ||||| ||||| ||| || | ||||| ||||| || |
Sbjct 1137022 GGATGTTGAGGGACTGGCTCTGGTCAATGAA-GGCTCCTCTGTCTGCAGCCATCTTTAAG 1136964
Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060
|||||||| ||||| ||||||||||| |||||
Sbjct 1136963 ATGGTCTTTTGCGAGATCTCCCACACGGTCTT 1136932
Score = 89.7 bits (98), Expect = 8e-13
Identities = 99/132 (75%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255
|||||| ||||| ||||| || | || ||| | | |||| | || | || |||| |
Sbjct 1136611 CTGAAACTCTCCAGACAGAACTCTGCGTGTGTAGATGTTGCTAGTATACGGCTCGATTGA 1136552
Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315
||| |||||||| | |||||||| ||| ||| ||||||||||||||||| |||||
Sbjct 1136551 CTCATTGTTGCCCAGGATCTGAGCAGTGGAGGCAGTGGGCATGGGAGCCAGCAGCAGACT 1136492
Query 204316 GTTGCGCACACC 204327
||| ||||| ||
Sbjct 1136491 GTTACGCACTCC 1136480
>seq159452
Length=1242
Score = 102 bits (112), Expect = 1e-16
Identities = 113/148 (76%), Gaps = 2/148 (1%)
Strand=Plus/Minus
Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973
|| ||| || || | ||||||| | |||||||| |||||| || || ||||| ||
Sbjct 580 CTTCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCGATGTGGAT 521
Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGG 204032
||| || |||||||| ||||| ||||| ||| || | ||||| ||||| || | ||||
Sbjct 520 GTTGAGGGACTGGCTCTGGTCAATGAA-GGCTCCTCTGTCTGCAGCCATCTTTAAGATGG 462
Query 204033 TCTTCTGCGAAATCTCCCACACCGTCTT 204060
|||| || || ||||||||||| |||||
Sbjct 461 TCTTTTGAGAGATCTCCCACACAGTCTT 434
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 793523412316880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |