Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq21577 145 2e-29
seq8150 138 3e-27
seq32410 136 9e-27
seq12251 118 2e-21
>seq21577
Length=2421781
Score = 145 bits (160), Expect = 2e-29
Identities = 163/218 (75%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | |||||| || || || || |||||||| |||| ||||||||| | || ||
Sbjct 23894 CGAAGACGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTG 23953
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||||||||||||| || |||||||| ||||||||||| || ||| ||| |||
Sbjct 23954 CGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCT 24013
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||||||| || | |||||| | | || || || |
Sbjct 24014 TCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGG 24073
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || || | || |||||||| || ||
Sbjct 24074 GTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTG 24111
Score = 145 bits (160), Expect = 2e-29
Identities = 158/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
|||||| || ||||| || |||||||| |||| ||||||||| | || || | ||||||
Sbjct 24358 CAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATC 24417
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
||||||||||| || |||||||| |||||||||||||| ||| ||| ||||| ||
Sbjct 24418 CTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATC 24477
Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
|| ||||| ||||||| || | |||||| | | || || ||||| ||||| ||
Sbjct 24478 TTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAAAGTGATTGT 24537
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || || ||||| || ||
Sbjct 24538 TTTTCCAGTTAGCGTCTTGACAAAGATCTG 24567
Score = 145 bits (160), Expect = 2e-29
Identities = 158/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
||||||||| ||||| || ||||| || |||| ||||||||| | || ||| | ||||||
Sbjct 24586 CAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATC 24645
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
||||| ||| || ||||||||||| | |||||||||||| ||| ||| ||||| ||
Sbjct 24646 TTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTATC 24705
Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
|| ||||| ||| ||| || | |||||| ||| ||| || || | ||||| ||
Sbjct 24706 TTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTTGGTTCCACCTCAAGAGTGATGGT 24765
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || | || |||||||| || ||
Sbjct 24766 TTTACCAGTCAAGGTCTTCACAAAGATCTG 24795
Score = 138 bits (152), Expect = 3e-27
Identities = 158/210 (75%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || |||||||| || |||||||| |||| ||||||||||| || ||| | |||||||
Sbjct 24815 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCATCT 24874
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| ||||| ||||| |||||||||||||| ||| ||| ||||| ||
Sbjct 24875 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 24934
Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
|| || ||| || || ||| || | |||||| | | || || || | ||||| ||
Sbjct 24935 TGGAT-TTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGT 24993
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||| || || || || || || || || ||
Sbjct 24994 CTTGCCAGTCAGGGTCTTGACGAAGATCTG 25023
Score = 129 bits (142), Expect = 1e-24
Identities = 156/210 (74%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || |||||||| || || ||||| |||| |||||| |||| || || | ||||||
Sbjct 24131 AGCACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATCC 24190
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| || |||||||| |||||||||||||| ||| ||| ||||| ||
Sbjct 24191 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 24250
Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
|| || ||| || || ||| || | |||||| | | || || || | ||||| ||
Sbjct 24251 TGGAT-TTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGT 24309
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||| || || || || |||||||| || ||
Sbjct 24310 CTTGCCAGTCAGGGTCTTCACAAAGATCTG 24339
Score = 125 bits (138), Expect = 2e-23
Identities = 156/211 (74%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
||||||||| ||||| || || ||||| |||| |||||| |||| || || | ||||||
Sbjct 25042 CAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATC 25101
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
||||| |||||| || |||||||| ||||||||||| || ||| || ||||| ||
Sbjct 25102 TTCCAACTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTC 25161
Query 199537 CTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCG 199595
|| || ||| || ||||| || | |||||| | | || || || | ||||| |
Sbjct 25162 TTGGAT-TTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGG 25220
Query 199596 TCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|||| || || || || |||||||| || ||
Sbjct 25221 TCTTGCCAGTCAGCGTCTTCACAAAGATCTG 25251
Score = 91.5 bits (100), Expect = 3e-13
Identities = 68/80 (85%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997
||||||||||| || ||||||||||||||| | ||| || |||| |||||| ||||||||
Sbjct 24669 ATCTTCGCCGGCAAACAGTTGGAAGATGGACGCACTCTGTCCGACTACAACATCCAGAAA 24610
Query 200998 GAGTCTACTCTTCACCTTGT 201017
||||| || || || |||||
Sbjct 24609 GAGTCCACACTCCATCTTGT 24590
>seq8150
Length=1005622
Score = 138 bits (152), Expect = 3e-27
Identities = 158/210 (75%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || ||||||||||| |||||||| |||| ||||||||| | || || | |||||||
Sbjct 148765 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 148824
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| || |||||||| ||||||||||| || ||| ||| ||||| ||
Sbjct 148825 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCT 148884
Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
|| || ||| || ||||| || | |||||| | | || || || | ||||| ||
Sbjct 148885 TGGAT-TTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGT 148943
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||| || || || || |||||||| || ||
Sbjct 148944 CTTGCCAGTCAGCGTCTTCACAAAGATCTG 148973
Score = 136 bits (150), Expect = 9e-27
Identities = 150/200 (75%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | |||||| || ||||| || |||||||| |||| ||||||||||| | ||
Sbjct 148484 CGAAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTG 148543
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||||||||||||| || |||||||| |||||||||||||| ||| ||| |||
Sbjct 148544 CGTCCATCTTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCT 148603
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| ||| || | |||||| | | || || || |
Sbjct 148604 TCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGG 148663
Query 199589 GTGATCGTCTTACCCGTGAG 199608
| ||| ||||| || || ||
Sbjct 148664 GGGATGGTCTTGCCAGTCAG 148683
>seq32410
Length=743546
Score = 136 bits (150), Expect = 9e-27
Identities = 156/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
||| ||||| || | || ||||| || |||| ||||||||||| ||| || | |||||
Sbjct 172036 CAGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAATGTGCGGCCATC 171977
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
||||||||| || ||||| ||||| | | ||||||||| || ||| |||||| ||
Sbjct 171976 TTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 171917
Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
||| | |||| ||| ||| || | |||||| ||| || || || | ||||| ||
Sbjct 171916 CTGGACCTTTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGT 171857
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|||||| ||||| ||||| ||||| || ||
Sbjct 171856 CTTACCAGTGAGTGTTTTGACAAAGATCTG 171827
Score = 109 bits (120), Expect = 1e-18
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
||| ||||| || | || ||||| || |||| ||||||||||| || || | |||||
Sbjct 172264 CAGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGGCCATC 172205
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
||||||||| || ||||| ||||| | | ||||||||| || ||| |||||| ||
Sbjct 172204 TTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 172145
Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
||| | |||| ||| ||| || | |||||| ||| || || || | ||||| ||
Sbjct 172144 CTGGACCTTTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGT 172085
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||| || || | || || || || || ||
Sbjct 172084 CTTGCCTGTCAAGGTCTTGACGAAGATCTG 172055
Score = 102 bits (112), Expect = 2e-16
Identities = 139/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492
|| ||||| || |||| ||||||||||| ||| || | |||||||||||||| || |||
Sbjct 172476 GTGGACTCTTTCTGGATGTTGTAGTCAGACAATGTGCGGCCATCTTCCAGCTGTTTGCCG 172417
Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552
|| ||||| | | ||||||||| || ||| |||||| ||||| ||||| |||
Sbjct 172416 GCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTTAGCCTTG 172357
Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612
||| || | ||||| ||| || || || | ||||| ||||| || || | ||
Sbjct 172356 ACGTTCTCAATTGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTGCCTGTCAAGGTC 172297
Query 199613 TTCACAAAAATTTG 199626
|| || || || ||
Sbjct 172296 TTGACGAAGATCTG 172283
>seq12251
Length=2530766
Score = 118 bits (130), Expect = 2e-21
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
||| || || || | || ||||| || |||| ||||||||||| || || | |||||
Sbjct 1821557 CAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGACCATC 1821498
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
||||||||| || || || || || | | ||||||||| || ||| |||||| ||
Sbjct 1821497 TTCCAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 1821438
Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
||| || ||| ||| ||| || | |||||| ||| || || || | ||||||||
Sbjct 1821437 CTGGATTTTTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCGACCTCAAGGGTGATCGT 1821378
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||| || ||||| ||||| ||||| || ||
Sbjct 1821377 CTTGCCAGTGAGGGTTTTGACAAAGATCTG 1821348
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1176441777834591
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