Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq12251 147 2e-30
seq21577 143 3e-29
seq8150 134 1e-26
seq32410 122 9e-23
>seq12251
Length=2530766
Score = 147 bits (162), Expect = 2e-30
Identities = 171/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || ||||| ||||| ||||| || |||||| | || |||||| | | |
Sbjct 1821345 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACGATCACCCTTGAGGTCGAGCCAAGC 1821404
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || | |||||||| |||||||| || |||||| | |||||
Sbjct 1821405 GACACCATTGAGAACG-TCAAGGCAAAAATCCAGGACAAAGAAGGCATTCCCCCTGACCA 1821463
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| || | |||| || |||||||||||||| || | ||||| || ||||||||
Sbjct 1821464 GCAGAGGTTGATTTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTGACTACAA 1821523
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| || || | || ||||| ||||||||||| | || || ||
Sbjct 1821524 CATCCAGAAAGAGTCCACCTTGCATCTGGTGCTGCGTCTCAGGGGAGG 1821571
>seq21577
Length=2421781
Score = 143 bits (158), Expect = 3e-29
Identities = 170/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || ||||| ||||||||| |||| || ||| ||| |
Sbjct 25026 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 24967
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | |||| ||||||| ||||| || || ||||| | |||||
Sbjct 24966 GACACCATTGAGAACG-TCAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGACCA 24908
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | || ||||| |||||||| || | ||||| || ||||||||
Sbjct 24907 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACTCTGTCTGACTACAA 24848
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| ||||| | || || || ||||||| ||| ||||||| ||
Sbjct 24847 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGTCTGAGAGGTGG 24800
Score = 138 bits (152), Expect = 1e-27
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || || || ||||| ||||||||| | || || ||| ||| |
Sbjct 24342 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 24283
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | |||| ||||||| ||||| || || ||||| | |||||
Sbjct 24282 GACACCATTGAGAACG-TCAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGACCA 24224
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | ||| ||||| |||||||| || | ||||| || || |||||
Sbjct 24223 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACGCTGTCTGATTACAA 24164
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| |||||| | || || || ||||||| ||| ||||||| ||
Sbjct 24163 CATCCAGAAGGAATCCACCCTCCACCTGGTGCTCCGTCTGAGAGGTGG 24116
Score = 132 bits (146), Expect = 5e-26
Identities = 168/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299
||| ||||| || || || || ||||| || ||||| ||||||||| |||| || ||| |
Sbjct 25258 AAAGATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCC 25199
Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
|| ||||| | | | | | |||| ||||||| ||||| || || || || | ||
Sbjct 25198 CAGCGACACCATTGAGAATGTGAAAGCTAAAATCCAAGACAAGGAAGGCATCCCTCCTGA 25139
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
|| ||||| || || | ||| ||||| ||| |||| || | ||||| || || ||
Sbjct 25138 TCAGCAGCGTCTGATCTTCGCTGGCAAGCAGTTGGAAGATGGACGCACGCTGTCTGATTA 25079
Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||||||| |||||| | || || ||| | || |||||| ||||||| ||
Sbjct 25078 CAACATCCAGAAGGAATCCACCCTCCATCTTGTCCTGCGTCTGAGAGGTGG 25028
Score = 125 bits (138), Expect = 7e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || ||||| || || ||||| ||||| | || || ||| |||
Sbjct 24570 ATGCAGATCTTTGTCAAGACGCTAACTGGAAAAACAATCACTTTGGAAGTTGAGCCCAGT 24511
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || | || |||| || || || || ||||| | |||||
Sbjct 24510 GACACCATTGAGAACG-TGAAGGCCAAGATCCAAGATAAGGAAGGCATTCCTCCTGACCA 24452
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | ||| ||||| |||||||| || | |||||||| |||||||||
Sbjct 24451 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACCCTGTCCGACTACAA 24392
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| ||||| | || || ||| | || |||||| ||||||| ||
Sbjct 24391 CATCCAGAAGGAGTCCACCCTCCATCTCGTCCTGCGTCTGAGAGGTGG 24344
Score = 118 bits (130), Expect = 1e-21
Identities = 158/217 (73%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || | || ||||| ||||||||| | || || ||| ||| |
Sbjct 24114 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 24055
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || | || |||| ||||| || || ||||| | || ||
Sbjct 24054 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCA 23996
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | ||| ||||| |||||||| || | ||||| || |||||||||
Sbjct 23995 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACGCTGTCCGACTACAA 23936
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||||| ||||| | || |||||| | || ||||||
Sbjct 23935 CATCCAGAAGGAGTCCACCCTGCATCTCGTCCTGCGT 23899
Score = 98.7 bits (108), Expect = 1e-15
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || | || || ||||||||||| | || || || | |
Sbjct 24798 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAAACCATCACTCTTGAGGTGGAACCAAGT 24739
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || | || |||| || || || || ||||| | |||||
Sbjct 24738 GACACCATTGAGAACG-TCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCTCCTGACCA 24680
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| | || | ||| ||||||||| |||| || | ||||| || |||||||||
Sbjct 24679 GCAGCGTTTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGCACTCTGTCCGACTACAA 24620
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| || || | || || ||| | || |||||| ||||||| ||
Sbjct 24619 CATCCAGAAAGAGTCCACACTCCATCTTGTCCTGCGTCTGAGAGGTGG 24572
>seq8150
Length=1005622
Score = 134 bits (148), Expect = 1e-26
Identities = 169/232 (73%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299
||| ||||| || || || || ||||| || ||||| ||||||||| | || || ||| |
Sbjct 148980 AAAGATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCC 148921
Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
|| ||||| | | | | | |||| ||||||| ||||| || || ||||| | ||
Sbjct 148920 CAGCGACACCATTGAGAATGTGAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGA 148861
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
|| ||||| || || | ||| ||||| |||||||| || | |||||||| ||||||
Sbjct 148860 TCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTA 148801
Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||||||||| ||||| | || || || ||||||| || | || || |||
Sbjct 148800 CAACATCCAGAAGGAGTCCACTCTCCACCTGGTGCTCCGCCTTAGGGGAGGC 148749
Score = 118 bits (130), Expect = 1e-21
Identities = 153/209 (73%), Gaps = 2/209 (1%)
Strand=Plus/Minus
Query 38264 GCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTA 38322
||| || ||||| |||||| || |||| || ||| ||| ||||| | | | |||| | |
Sbjct 148684 GCTGACTGGCAAGACCATCCCCCTCGAGGTTGAGCCCAGCGACACCATTGAGAACG-TCA 148626
Query 38323 AAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGG 38382
| | || |||| ||||| || || ||||| | ||||| ||||| || || | ||| |
Sbjct 148625 AGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTGATCTTCGCTG 148566
Query 38383 GCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGC 38442
| || |||||||| || | ||||||||| |||||||||||||| ||||| | || |
Sbjct 148565 GTAAGCAGCTGGAAGATGGACGCACCCTCTCTGACTACAACATCCAGAAGGAGTCCACCC 148506
Query 38443 TGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
| ||| | || |||||| | | ||||||
Sbjct 148505 TCCATCTCGTCCTGCGTCTTCGTGGCGGC 148477
>seq32410
Length=743546
Score = 122 bits (134), Expect = 9e-23
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || ||||| ||||| || || ||||||||| | || || ||| | | |
Sbjct 171824 ATGCAGATCTTTGTCAAAACACTCACTGGTAAGACCATCACCCTTGAGGTTGAGCCAAGC 171883
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || | ||| ||| |||||||| || |||||| | |||||
Sbjct 171884 GACACCATTGAGAACG-TCAAGGCAAAGGTCCAGGACAAAGAAGGCATTCCCCCTGACCA 171942
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| || | || | || |||||||||||||| || | ||||| | ||||||||
Sbjct 171943 GCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACTACAA 172002
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||| || || | || ||||| | ||||||||| | || || |||
Sbjct 172003 CATCCAGAAAGAGTCCACCTTGCATCTTGTGCTGCGTCTCAGGGGAGGC 172051
Score = 122 bits (134), Expect = 9e-23
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || | || ||||| ||||||||| | || || ||| | | |
Sbjct 172052 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 172111
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || | ||| ||| |||||||| || |||||| | |||||
Sbjct 172112 GACACCATTGAGAACG-TCAAGGCAAAGGTCCAGGACAAAGAAGGCATTCCCCCTGACCA 172170
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| || | || | || |||||||||||||| || | ||||| || ||||||||
Sbjct 172171 GCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACACTGTCTGACTACAA 172230
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||| || || | || ||||| | ||||||||| | || || |||
Sbjct 172231 CATCCAGAAAGAGTCCACCTTGCATCTTGTGCTGCGTCTCAGGGGAGGC 172279
Score = 111 bits (122), Expect = 2e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || | || ||||| ||||||||| | || || ||| | | |
Sbjct 172280 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 172339
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | |||| | || | || |||| |||||||| || |||||| | |||||
Sbjct 172340 GACACAATTGAGAACG-TCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCA 172398
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| || | || | || |||||||||||||| || | ||||| | ||||||||
Sbjct 172399 GCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACTACAA 172458
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| || || | || ||||| ||||| ||||| | || || ||
Sbjct 172459 CATCCAGAAAGAGTCCACCTTGCATCTGGTGTTGCGTCTCAGGGGAGG 172506
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499146364136320
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