Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq21577 111 6e-19
seq8150 98.7 4e-15
seq16473 95.1 5e-14
seq12469 91.5 6e-13
>seq21577
Length=2421781
Score = 111 bits (122), Expect = 6e-19
Identities = 159/224 (71%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || || || || || ||||||||||||| || |||||||| || ||| || |
Sbjct 24798 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAAACCATCACTCTTGAGGTGGAACCAAGT 24739
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | |||||| | || || || |||||||||||||| ||||||||||| ||
Sbjct 24738 GACACCATTGAGAACGTCAAGGCCAAGATCCAAGATAAGGAAGGCATTCCTCCTGACCAG 24679
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| ||||| || ||| | || ||||| | ||||||||| | ||| || | || || ||
Sbjct 24678 CAGCGTTTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGCACTCTGTCCGACTACAAC 24619
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273
|| | || || | ||||| || | || | | ||||||||
Sbjct 24618 ATCCAGAAAGAGTCCACACTCCATCTTGTCCTGCGTCTGAGAGG 24575
Score = 93.3 bits (102), Expect = 2e-13
Identities = 155/224 (69%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || || || || || |||||||| || || || || ||||| ||||| |
Sbjct 24342 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 24283
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | |||||| | ||| ||||| ||||| |||||||| ||||||||||| ||
Sbjct 24282 GACACCATTGAGAACGTCAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 24223
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| ||| | || ||| | || || || || || |||||| | || || | ||||| ||
Sbjct 24222 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACGCTGTCTGATTACAAC 24163
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273
|| | ||||| | || || ||| | || | | ||||||||
Sbjct 24162 ATCCAGAAGGAATCCACCCTCCACCTGGTGCTCCGTCTGAGAGG 24119
Score = 93.3 bits (102), Expect = 2e-13
Identities = 155/224 (69%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || ||||| || || |||||||| || || || || || || ||||| |
Sbjct 25026 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 24967
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | |||||| | ||| ||||| ||||| |||||||| ||||||||||| ||
Sbjct 24966 GACACCATTGAGAACGTCAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 24907
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| ||| | || || | || || || || ||||||||| | ||| || | || || ||
Sbjct 24906 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACTCTGTCTGACTACAAC 24847
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273
|| | ||||| | || || ||| | || | | ||||||||
Sbjct 24846 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGTCTGAGAGG 24803
Score = 89.7 bits (98), Expect = 2e-12
Identities = 154/224 (69%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || || || || || |||||||| || || || || || || ||||| |
Sbjct 25254 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 25195
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | |||||| | | ||| ||||| ||||| |||||||| || |||||||||||
Sbjct 25194 GACACCATTGAGAATGTGAAAGCTAAAATCCAAGACAAGGAAGGCATCCCTCCTGATCAG 25135
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| ||| | || ||| | || || || | ||||||||| | || || | ||||| ||
Sbjct 25134 CAGCGTCTGATCTTCGCTGGCAAGCAGTTGGAAGATGGACGCACGCTGTCTGATTACAAC 25075
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273
|| | ||||| | || || || | || | | ||||||||
Sbjct 25074 ATCCAGAAGGAATCCACCCTCCATCTTGTCCTGCGTCTGAGAGG 25031
>seq8150
Length=1005622
Score = 98.7 bits (108), Expect = 4e-15
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || || || || || |||||||| || || || || ||||| ||||| |
Sbjct 148976 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 148917
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | |||||| | | ||| ||||| ||||| |||||||| ||||||||||||||
Sbjct 148916 GACACCATTGAGAATGTGAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGATCAG 148857
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| ||| | || ||| | || || || || ||||||||| | || || | || || ||
Sbjct 148856 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 148797
Query 391230 ATTGATAAGGATGCAACACTTCAC 391253
|| | ||||| | || || |||
Sbjct 148796 ATCCAGAAGGAGTCCACTCTCCAC 148773
>seq16473
Length=1325276
Score = 95.1 bits (104), Expect = 5e-14
Identities = 79/97 (81%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 450918 TTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTAG 450977
|||| |||||||| || ||||||| || ||||||||||||| |||| ||||||| || |
Sbjct 1294554 TTGGTATTGATCTCGGGACCACCTACTCCTGTGTAGGTGTTTTCCAACATGGAAAAGTTG 1294495
Query 450978 AAATTATAGCAAATGACCAAGGATCACGAACTACTCC 451014
|||| || || |||||||||||| || || |||||
Sbjct 1294494 AAATCATTGCTAATGACCAAGGAAACCGGACCACTCC 1294458
>seq12469
Length=2929400
Score = 91.5 bits (100), Expect = 6e-13
Identities = 70/83 (84%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 450918 TTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTAG 450977
|||| |||||||| || ||||||| || ||||||||||||| |||| ||||||| || |
Sbjct 1392434 TTGGTATTGATCTCGGGACCACCTACTCCTGTGTAGGTGTTTTCCAACATGGAAAAGTTG 1392375
Query 450978 AAATTATAGCAAATGACCAAGGA 451000
|||| || || ||||||||||||
Sbjct 1392374 AAATCATTGCTAATGACCAAGGA 1392352
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1971562542408684
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |