Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015-
12-14] 164,173 sequences; 1,655,786,410 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq147642 116 4e-21
seq15552 116 4e-21
seq19765 82.4 9e-11
>seq147642
Length=763
Score = 116 bits (128), Expect = 4e-21
Identities = 108/137 (79%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551
|||||||||| |||||||||| ||| ||||| |||||||| | || || || ||
Sbjct 616 CTCATCCTTACTGGTGTACTCTACAATCTCTGTGCACAAGTTACTGCATTTGATGGTGCC 675
Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611
|| |||| ||||| ||||| |||||| ||||||||||||||||||||||| || ||
Sbjct 676 CAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGTAGGGTGTGCC 735
Query 106612 CGTCTCCGTCTGTGACT 106628
||||| ||||| ||||
Sbjct 736 GGTCTCTGTCTGAGACT 752
>seq15552
Length=1137653
Score = 116 bits (128), Expect = 4e-21
Identities = 108/137 (79%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551
|||||||||| |||||||||| ||||||||| |||||||| | ||||| || ||
Sbjct 1133845 CTCATCCTTACTGGTGTACTCTACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCC 1133786
Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611
|| |||| ||||| || || |||||| ||||||||||| ||||||||||| || ||
Sbjct 1133785 CAGGTTCTGCTGGTTGCTTTTGCGGTTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGCC 1133726
Query 106612 CGTCTCCGTCTGTGACT 106628
||||| ||||| ||||
Sbjct 1133725 GGTCTCTGTCTGAGACT 1133709
>seq19765
Length=1114994
Score = 82.4 bits (90), Expect = 9e-11
Identities = 93/122 (76%), Gaps = 2/122 (2%)
Strand=Plus/Minus
Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352
||||||||| | ||||||||||| |||||| || || |||||||| || | |||||
Sbjct 414477 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 414418
Query 117353 TCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411
| ||||| |||||| ||| || ||||| | |||||||| || |||||| |||||
Sbjct 414417 TTAACCAGAAAATAGAAGCA-AAAGACCCAAAAAAGAAGATTCCTTCCACAGCAGCAAAA 414359
Query 117412 GC 117413
||
Sbjct 414358 GC 414357
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588770063526520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |