Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq147642 116 4e-21 seq15552 116 4e-21 seq19765 82.4 9e-11 >seq147642 Length=763 Score = 116 bits (128), Expect = 4e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||||||| |||||||||| ||| ||||| |||||||| | || || || || Sbjct 616 CTCATCCTTACTGGTGTACTCTACAATCTCTGTGCACAAGTTACTGCATTTGATGGTGCC 675 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || |||| ||||| ||||| |||||| ||||||||||||||||||||||| || || Sbjct 676 CAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGTAGGGTGTGCC 735 Query 106612 CGTCTCCGTCTGTGACT 106628 ||||| ||||| |||| Sbjct 736 GGTCTCTGTCTGAGACT 752 >seq15552 Length=1137653 Score = 116 bits (128), Expect = 4e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||||||| |||||||||| ||||||||| |||||||| | ||||| || || Sbjct 1133845 CTCATCCTTACTGGTGTACTCTACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCC 1133786 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || |||| ||||| || || |||||| ||||||||||| ||||||||||| || || Sbjct 1133785 CAGGTTCTGCTGGTTGCTTTTGCGGTTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGCC 1133726 Query 106612 CGTCTCCGTCTGTGACT 106628 ||||| ||||| |||| Sbjct 1133725 GGTCTCTGTCTGAGACT 1133709 >seq19765 Length=1114994 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 ||||||||| | ||||||||||| |||||| || || |||||||| || | ||||| Sbjct 414477 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 414418 Query 117353 TCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 | ||||| |||||| ||| || ||||| | |||||||| || |||||| ||||| Sbjct 414417 TTAACCAGAAAATAGAAGCA-AAAGACCCAAAAAAGAAGATTCCTTCCACAGCAGCAAAA 414359 Query 117412 GC 117413 || Sbjct 414358 GC 414357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588770063526520