Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20rhinocerous_20[refseq_20GCF_5F001515625.1_202015- 12-14] 164,173 sequences; 1,655,786,410 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq21577 113 3e-20 seq8150 102 5e-17 seq32410 89.7 3e-13 >seq21577 Length=2421781 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || || | ||| |||| ||| Sbjct 24818 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCATCTTCC 24877 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || || || |||||||| | || | || |||||||| Sbjct 24878 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGG 24937 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || ||||||| | || | || | || |||||| |||| ||| ||||| || Sbjct 24938 ATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTTG 24997 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || ||||| || |||||||||||| Sbjct 24998 CCAGTCAGGGTCTTGACGAAGATCTGCATA 25027 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| ||| ||||| ||||| || || || || | ||| |||| ||| Sbjct 24134 ACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATCCTCC 24193 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || |||||||| | || | || |||||||| Sbjct 24194 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGG 24253 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || ||||||| | || | || | || |||||| || | ||| ||||| || Sbjct 24254 ATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTG 24313 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || ||||||||||||||||||||| Sbjct 24314 CCAGTCAGGGTCTTCACAAAGATCTGCATA 24343 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | ||| |||| |||||||| || || || || Sbjct 24380 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAG 24439 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | || ||||| || ||||| || ||| Sbjct 24440 ATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCTTGGATCTTGGCCTTCACGTTC 24499 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || |||||| || | || || |||||||| || || ||||| ||| Sbjct 24500 TCAATGGTGTCACTGGGCTCAACTTCCAAAGTGATTGTTTTTCCAGTTAGCGTCTTGACA 24559 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 24560 AAGATCTGCATA 24571 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | ||| |||| |||||||| || || || || Sbjct 23924 TCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAG 23983 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | || |||||||| ||||| || ||| Sbjct 23984 ATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTC 24043 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | || |||||| || | ||| ||||| || || || | ||||||||| Sbjct 24044 TCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACA 24103 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 24104 AAGATCTGCATA 24115 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || || | ||| |||| |||| |||||| ||||| || Sbjct 24608 TCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAG 24667 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || |||||||| | || | || ||||| || ||||| |||||| Sbjct 24668 ATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCTTGGATCTTGGCCTTGACGTTC 24727 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| | || || || | || |||||||| || || | ||||||||| Sbjct 24728 TCAATGGTGTCACTTGGTTCCACCTCAAGAGTGATGGTTTTACCAGTCAAGGTCTTCACA 24787 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 24788 AAGATCTGCATA 24799 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| || || || || | ||| |||| |||| ||| || || || || Sbjct 25063 TTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATCTTCCAACTGCTTGCCAGCGAA 25122 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||| || | || | || |||||||| || || ||| || | Sbjct 25123 GATCAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATTTTAGCTTTCAC--A 25180 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | || | || |||||| |||| ||| ||||| || || || || |||||| Sbjct 25181 TTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTC 25240 Query 34968 ACAAAGATCTGCATATT 34984 |||||||||||||| || Sbjct 25241 ACAAAGATCTGCATCTT 25257 >seq8150 Length=1005622 Score = 102 bits (112), Expect = 5e-17 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||| | | | |||| ||| | ||| || ||||| ||||| ||||| || Sbjct 148750 CCTCCCCTAAGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 148809 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | ||| |||| |||||||| || || || || || || || ||||| || | || Sbjct 148810 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGA 148869 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || |||||||| || || ||| || || || || | || | || ||||| Sbjct 148870 ATGCCTTCCTTGTCTTGGATTTTAGCTTTCAC--ATTCTCAATGGTGTCGCTGGGCTCAA 148927 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || | ||| ||||| || || || || |||||||||||||||||||| || Sbjct 148928 CCTCAAGGGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTT 148979 >seq32410 Length=743546 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||| | | ||| |||| || | ||| |||||||| ||||| ||||| || Sbjct 172506 CCTCCCCTGAGACGCAACACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 172447 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | || |||| ||||||||||| |||||||| || | | |||||||| | || Sbjct 172446 AATGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGA 172387 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || ||||| ||||| |||||| | || | || | | |||||| Sbjct 172386 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACGTTCTCAATTGTGTCGCTTGGCTCAACC 172327 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| ||||| || || || | ||||| || ||||||||||| Sbjct 172326 TCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 172280 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || | | || |||| ||||||||||| |||||||| Sbjct 172014 TCTTTCTGGATGTTGTAGTCAGACAATGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAG 171955 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | |||||||| | || | || || ||||| | ||| |||||| Sbjct 171954 ATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGACCTTTGCCTTGACGTTC 171895 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | | |||||| || | ||| ||||| || || ||||| || || ||| Sbjct 171894 TCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTACCAGTGAGTGTTTTGACA 171835 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 171834 AAGATCTGCAT 171824 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || || | || |||| ||||||||||| |||||||| Sbjct 172242 TCTTTCTGGATGTTGTAGTCAGACAGTGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAG 172183 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | |||||||| | || | || || ||||| | ||| |||||| Sbjct 172182 ATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGACCTTTGCCTTGACGTTC 172123 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | | |||||| || | ||| ||||| || || || | ||||| || Sbjct 172122 TCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACG 172063 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 172062 AAGATCTGCAT 172052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323984054122344